Scripts and output from "Comprehensive degron mapping in human transcription factors" by Fia B. Larsen, Vasileios Voutsinos, Nicolas Jonsson, Kristoffer E. Johansson, Freia D. Ethelberg, Kresten Lindorff-Larsen and Rasmus Hartmann-Petersen
- library: Script and input files for makeing the DNA libraries based on Lambert18
- counts: Scripts for processing FASTQ files. Output counts and raw FASTQ files are available on ERDA
- score: Scripts for calculating scores. FACS data files are available on ERDA
- plots: Scripts for plotting
- annotations: Scripts for mapping scores to the library and annotating with PAP, ADPred and structural features
- analyses: Scripts for analyses and plotting
The main resulting data is in annotations/transfac_tiles.csv.gz and transfac_proteins.csv.gz
Sequencing counts, FASTQ files and FACS data are available on ERDA
FASTQ files are deposited at NCBI SRA under BioProject ID: PRJNA1276444