Search results

Sample analysis notebook

Status: Open.

#34 In KarchinLab/TCRtoolkit-Bulk;

· dltamayo opened on May 16, 2025

Pseudobulking 10x scRNA TCR sequencing

Status: Open.

#33 In KarchinLab/TCRtoolkit-Bulk;

· dltamayo opened on May 16, 2025

Standardizing inputs to AIRR format

Status: Open.

#32 In KarchinLab/TCRtoolkit-Bulk;

· dltamayo opened on May 16, 2025

automated tests

Status: Open.

#31 In KarchinLab/TCRtoolkit-Bulk;

· dimalvovs opened on May 16, 2025

T cell phenotype prediction

Status: Open.

#29 In KarchinLab/TCRtoolkit-Bulk;

· RachelKarchin opened on Apr 26, 2025

TCR antigen specificity

Status: Open.

#28 In KarchinLab/TCRtoolkit-Bulk;

· RachelKarchin opened on Apr 26, 2025

Update script/notebook logging

Status: Open.

#26 In KarchinLab/TCRtoolkit-Bulk;

· dltamayo opened on Apr 24, 2025

Container versioning

Status: Open.

#25 In KarchinLab/TCRtoolkit-Bulk;

· dimalvovs opened on Apr 24, 2025

Aggregate clones by samples

Status: Open.

#23 In KarchinLab/TCRtoolkit-Bulk;

· dimalvovs opened on Apr 9, 2025

Adding genes not in tcrdist3 library

Status: Open.

#20 In KarchinLab/TCRtoolkit-Bulk;

· dltamayo opened on Mar 26, 2025

TCR generation probabilities

Status: Open.

#11 In KarchinLab/TCRtoolkit-Bulk;

· RachelKarchin opened on Mar 20, 2025

Overlap analysis notebook #1

Status: Open.

#9 In KarchinLab/TCRtoolkit-Bulk;

· RachelKarchin opened on Mar 20, 2025