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TCR specificities: Leveraging databases with known specificities

Status: Open.

#49 In KarchinLab/TCRtoolkit-Bulk;

· KevinMLanderos opened on Jul 21, 2025

Phenotype-grouped pseudobulk

Status: Open.

#48 In KarchinLab/TCRtoolkit-Bulk;

· dltamayo opened on Jul 17, 2025

Reformat column name handling

Status: Open.

#43 In KarchinLab/TCRtoolkit-Bulk;

· dltamayo opened on Jul 3, 2025

Sample analysis notebook

Status: Open.

#34 In KarchinLab/TCRtoolkit-Bulk;

· dltamayo opened on May 16, 2025

Pseudobulking 10x scRNA TCR sequencing

Status: Open.

#33 In KarchinLab/TCRtoolkit-Bulk;

· dltamayo opened on May 16, 2025

TCR antigen specificity

Status: Open.

#28 In KarchinLab/TCRtoolkit-Bulk;

· RachelKarchin opened on Apr 26, 2025

Update script/notebook logging

Status: Open.

#26 In KarchinLab/TCRtoolkit-Bulk;

· dltamayo opened on Apr 24, 2025

Container versioning

Status: Open.

#25 In KarchinLab/TCRtoolkit-Bulk;

· dimalvovs opened on Apr 24, 2025

Aggregate clones by samples

Status: Open.

#23 In KarchinLab/TCRtoolkit-Bulk;

· dimalvovs opened on Apr 9, 2025

Adding genes not in tcrdist3 library

Status: Open.

#20 In KarchinLab/TCRtoolkit-Bulk;

· dltamayo opened on Mar 26, 2025

TCR generation probabilities

Status: Open.

#11 In KarchinLab/TCRtoolkit-Bulk;

· RachelKarchin opened on Mar 20, 2025

Overlap analysis notebook #1

Status: Open.

#9 In KarchinLab/TCRtoolkit-Bulk;

· RachelKarchin opened on Mar 20, 2025