GirderEEGViewer

Works only on Linux/Mac, not on Windows.

Create environment and install dependencies

python -m venv env
source env/bin/activate
pip install .

Build eegviz lib

To build the eegviz library, you can unzip the eegvizlib-0.0.0.tar.gz archive provided in the assets and follow the instructions below. The PACKAGES_PATH should be replaced with the absolute path to the site-packages directory of your virtual environment.

tar xf eegvizlib-0.0.0.tar.gz
cd eegvizlib-0.0.0
mkdir {PACKAGES_PATH}/eegviz
./configure --prefix={PACKAGES_PATH}/eegviz
make
make install

You may have to install SDL before calling "configure":

sudo apt install libsdl2-dev libsdl2-ttf-dev

Contributing

Install development dependencies

pip install -e ".[dev]"

Optional dependencies

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Faster Jpeg encoding using TurboJPEG.

macOS system install

# macOS
brew install jpeg-turbo

Windows install Download and install from Github: https://github.com/libjpeg-turbo/libjpeg-turbo/releases

Linux install

# RHEL/CentOS/Fedora
# YUM doc: https://libjpeg-turbo.org/Downloads/YUM
# Ubuntu
apt-get install libturbojpeg

Once your system is ready, you can install the dependencies:

pip install ".[turbo]"

Run trame application

girdereegviewer file.neonatal

To test the application, you can try to use the example.neonatal file provided in the assets. You can add --server to your command line to prevent your browser from opening and --port to specifiy the port the server should listen to, default is 8080.