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  1. fromAssembly2Feature fromAssembly2Feature Public

    This repository contains several scripts to detect sequences in your assembly. These sequences can be genes, proteins, or rna. See each script option

    Perl 2

  2. DeEP DeEP Public

    Deconstructive Evolutionary Pipeline

    Perl

  3. AdjustedMutualInformation AdjustedMutualInformation Public

    AdjMI.c is a program that calculates the AMI for each pair of SNP sites in an alignment. Takes two SNP sites from an alignment per time and calculates the Adjusted Mutual Information. It is optimis…

    C

  4. Assembly2Gene Assembly2Gene Public

    Detect genes in an assembly, and get their detailed alignments and description using fromAssembly2gene. fromAssembly2gene is a perl program that used several available programs and R packages to id…

    Perl

  5. Scanning-Mutagenesis-SNV-Counter Scanning-Mutagenesis-SNV-Counter Public

    Count single nucleotide variant (SNV) in vector sequencing of genes of interest

    HTML