Assignment-the-third

Demultiplexing and Index Swapping - Assignment the Third

Write your code to demultiplex the samples. Be sure to:

• Incorporate feedback from peer code reviews
• Utilize appropriate functions (perhaps you want to import bioinfo???)
• Sufficiently comment your code/use docstrings/use type annotations on functions
• Use unit tests on functions/entire algorithm to ensure it works properly
• Create a useful report for the end user of your code
• Use argparse to "generalize" your code
• Be mindful of "simple" things you can do to optimize your code
• Follow the specifications laid out in Assignment the First for the code
  • Unclear? Ask!

Modules that are fair game to import:

• bioinfo
• argparse
• math
• gzip
• numpy
• matplotlib
• itertools

Final work will be submitted on GitHub in the Assignment-the-Third folder. Make sure your folder is well organized and final output is clearly labeled/summarized (a markdown file would be much appreciated!!). Use your code to demultiplex the samples and report:

• Percentage of reads from each sample
• Overall amount of index swapping
• Any figures/any other relevant data your code output