I am a bioinformatician with broad experience across multiple sequencing data types, including genomic, transcriptomic, epigenetic, metagenomic, and amplicon-based datasets (see below for details). My work combines biological discovery with the development of automated bioinformatics workflows that make analyses more accessible, reproducible, and efficient.
- PhD: Spruce tree migration & local climate adaptation in Sweden using whole-exome sequencing.
- Postdoc: Gene expression in choroid plexus cells during development and response to multiple sclerosis using scRNA-seq, bulk RNA-seq, scATAC-seq.
- Current role: Focus on metagenomic and amplicon sequencing for surveillance, diagnostics, and research.
- 🚀 nf-core/taxprofiler → Profiling metagenomic sequencing data
- 🧬 genomic-medicine-sweden/metaval → Post-processing for nf-core/taxprofiler
- 🔎 EVICT → Enterovirus Variant Identification and Contig Typing
- 🦠 In-house viral typing & drug resistance pipelines (e.g. HIV, enterovirus)
- Whole-genome sequencing (WGS)
- Whole-exome sequencing (WES)
- Single-cell RNA-seq (scRNA-seq)
- Bulk RNA-seq
- Single-cell ATAC-seq
- Metagenomic sequencing
✨ Always exploring ways to combine biology and technology to answer complex questions.