Add Delft3D Module #71
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| name: MHKiT-MATLAB Unix Unit Tests | |
| on: | |
| push: | |
| branches: [master, develop, ebbflood] | |
| pull_request: | |
| branches: [master, develop, ebbflood] | |
| jobs: | |
| cache_population: | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest] | |
| python-version: ["3.10"] | |
| matlab-version: [R2022b] | |
| runs-on: ${{ matrix.os }} | |
| env: | |
| mhkit-python-dir: "MHKiT-Python" | |
| steps: | |
| - name: Check out MHKiT-MATLAB | |
| uses: actions/checkout@v4 | |
| - name: Check out MHKiT-Python | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: "MHKiT-Software/MHKiT-Python" | |
| path: ${{env.mhkit-python-dir}} | |
| - name: Install & Setup Miniconda | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| auto-update-conda: true | |
| python-version: ${{ matrix.python-version }} | |
| activate-environment: MHKIT_CONDA_ENV | |
| channels: conda-forge | |
| - name: Setup Python ${{ matrix.python-version }} | |
| shell: bash -l {0} | |
| run: | | |
| conda create --name MHKIT_CONDA_ENV python=${{ matrix.python-version }} numpy cython pip pytest hdf5 libnetcdf cftime openssl --strict-channel-priority | |
| conda activate MHKIT_CONDA_ENV | |
| conda install -c conda-forge netcdf4 | |
| export PATH="${CONDA_PREFIX}/bin:${CONDA_PREFIX}/Library/bin:$PATH" # so setup.py finds nc-config | |
| pip install -e . --no-deps --force-reinstall | |
| - name: pip install mhkit module from source | |
| shell: bash -l {0} | |
| run: | | |
| conda activate MHKIT_CONDA_ENV | |
| pip install -e . | |
| working-directory: ${{env.mhkit-python-dir}} | |
| - name: pip install mhkit-python-utils module from source | |
| shell: bash -l {0} | |
| run: | | |
| conda activate MHKIT_CONDA_ENV | |
| pip install -e . | |
| # Create the cache and add a dummy file | |
| # The dummy file ensures that the artifact download | |
| - name: Setup mhkit_webread_cache | |
| shell: bash -l {0} | |
| run: | | |
| mkdir mhkit_webread_cache | |
| touch mhkit_webread_cache/test.txt | |
| echo "Hello World" > mhkit_webread_cache/test.txt | |
| - name: Set up MATLAB | |
| uses: matlab-actions/setup-matlab@v1 | |
| with: | |
| release: ${{ matrix.matlab-version }} | |
| # OutOfProcess is required to properly call netcdf/hdf5 and works reliably on macos and ubuntu | |
| - name: Configure MATLAB Python Environment | |
| shell: bash -l {0} | |
| run: | | |
| conda activate MHKIT_CONDA_ENV | |
| printf 'pyenv(Version="%s", ExecutionMode="OutOfProcess")\n' $(python -c "import sys; print(sys.executable)") > run.m | |
| - name: Add MATLAB test commands | |
| shell: bash | |
| run: echo "version, | |
| addpath(genpath('mhkit')), | |
| import matlab.unittest.TestSuite, | |
| import matlab.unittest.TestRunner, | |
| testFolder = ['mhkit' filesep 'tests'], | |
| suite = TestSuite.fromFolder(testFolder), | |
| runner = TestRunner.withTextOutput, | |
| results = runner.run(suite), | |
| assertSuccess(results)" >> run.m | |
| - name: Output run.m | |
| shell: bash | |
| run: cat run.m | |
| - name: Run MATLAB Unit Tests | |
| uses: matlab-actions/run-command@v1 | |
| with: | |
| command: run | |
| startup-options: -noFigureWindows | |
| - name: Save mhkit_webread_cache directory as an artifact | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| # GitHub Action "Name" of artifact | |
| name: mhkit_webread_cache | |
| # Filesystem path of directory | |
| path: mhkit_webread_cache | |
| main: | |
| needs: cache_population | |
| strategy: | |
| fail-fast: false | |
| # Expecting 2 * 4 * 7 - (13 * 2) = 30 jobs | |
| matrix: | |
| os: [macos-latest, ubuntu-latest] | |
| python-version: [3.8, 3.9, "3.10", 3.11] | |
| # Note: It is preferred to use an actual release name as opposed to 'latest' | |
| matlab-version: [R2021b, R2022a, R2022b, R2023a, R2023b] | |
| exclude: | |
| # cache_population job | |
| - python-version: "3.10" | |
| matlab-version: R2022b | |
| os: ubuntu-latest | |
| # Non compatiable MATLAB/Python Versions according to Mathworks | |
| - matlab-version: R2023b | |
| python-version: 3.8 | |
| - matlab-version: R2023a | |
| python-version: 3.11 | |
| - matlab-version: R2022b | |
| python-version: 3.11 | |
| - matlab-version: R2022a | |
| python-version: 3.11 | |
| - matlab-version: R2022a | |
| python-version: "3.10" | |
| - matlab-version: R2021b | |
| python-version: 3.11 | |
| - matlab-version: R2021b | |
| python-version: "3.10" | |
| - matlab-version: R2021a | |
| python-version: 3.11 | |
| - matlab-version: R2021a | |
| python-version: "3.10" | |
| - matlab-version: R2021a | |
| python-version: 3.9 | |
| - matlab-version: R2020b | |
| python-version: 3.11 | |
| - matlab-version: R2020b | |
| python-version: "3.10" | |
| - matlab-version: R2020b | |
| python-version: 3.9 | |
| # Combinations with failing tests that seem related to GitHub Actions | |
| - matlab-version: R2023b | |
| os: macos-latest | |
| runs-on: ${{ matrix.os }} | |
| env: | |
| mhkit-python-dir: "MHKiT-Python" | |
| steps: | |
| - name: Check out MHKiT-MATLAB | |
| uses: actions/checkout@v4 | |
| - name: Check out MHKiT-Python | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: "MHKiT-Software/MHKiT-Python" | |
| path: ${{env.mhkit-python-dir}} | |
| # - name: Setup Conda | |
| # uses: s-weigand/setup-conda@v1 | |
| # with: | |
| # activate-conda: false | |
| # conda-channels: conda-forge | |
| - name: Install & Setup Miniconda | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| auto-update-conda: true | |
| python-version: ${{ matrix.python-version }} | |
| activate-environment: MHKIT_CONDA_ENV | |
| channels: conda-forge | |
| - name: Setup Python ${{ matrix.python-version }} | |
| shell: bash -l {0} | |
| run: | | |
| conda create --name MHKIT_CONDA_ENV python=${{ matrix.python-version }} numpy cython pip pytest hdf5 libnetcdf cftime netcdf4 --strict-channel-priority | |
| conda activate MHKIT_CONDA_ENV | |
| export PATH="${CONDA_PREFIX}/bin:${CONDA_PREFIX}/Library/bin:$PATH" # so setup.py finds nc-config | |
| pip install -e . --no-deps --force-reinstall | |
| # - name: Setup Python | |
| # uses: actions/setup-python@v4 | |
| # with: | |
| # python-version: ${{ matrix.python-version }} | |
| # - name: Setup MHKiT Dependencies on macOS | |
| # run: brew install hdf5 netcdf | |
| # if: ${{ matrix.os == 'macos-latest' }} | |
| # - name: Setup MHKiT Dependencies on ubuntu | |
| # run: sudo apt install libhdf5-serial-dev libnetcdf-dev | |
| # if: ${{ matrix.os == 'ubuntu-latest' }} | |
| # - name: Setup MHKiT Dependencies on ubuntu | |
| # if: ${{ matrix.os == 'ubuntu-latest' }} | |
| # run: | | |
| # sudo apt update | |
| # sudo apt upgrade | |
| # sudo apt install build-essential | |
| # - name: Print GCC Version | |
| # if: ${{ matrix.os == 'ubuntu-latest' }} | |
| # run: | | |
| # gcc --version | |
| # g++ --version | |
| # - name: Setup MATLAB Path on Ubuntu | |
| # if: ${{ matrix.os == 'ubuntu-latest' }} | |
| # run: echo "export LD_LIBRARY_PATH=/usr/local/MATLAB/${{ matrix.matlab-version }}/sys/os/glnxa64" >> "$GITHUB_ENV" | |
| - name: Setup MATLAB Path on Ubuntu | |
| if: ${{ matrix.os == 'ubuntu-latest' }} | |
| run: echo "LD_PRELOAD=/lib/x86_64-linux-gnu/libstdc++.so.6" >> "$GITHUB_ENV" | |
| - name: Print Python executable | |
| shell: bash -l {0} | |
| run: | | |
| conda activate MHKIT_CONDA_ENV | |
| python -c "import sys; print(sys.executable)" | |
| - name: Print Python Version | |
| shell: bash -l {0} | |
| run: | | |
| conda activate MHKIT_CONDA_ENV | |
| python --version | |
| - name: pip install mhkit module from source | |
| shell: bash -l {0} | |
| run: | | |
| conda activate MHKIT_CONDA_ENV | |
| pip install -e . | |
| working-directory: ${{env.mhkit-python-dir}} | |
| - name: pip install mhkit-python-utils module from source | |
| shell: bash -l {0} | |
| run: | | |
| conda activate MHKIT_CONDA_ENV | |
| pip install -e . | |
| - name: List installed pip modules | |
| shell: bash -l {0} | |
| run: | | |
| conda activate MHKIT_CONDA_ENV | |
| pip freeze | |
| - name: Print MHKiT-Python Version | |
| shell: bash -l {0} | |
| run: | | |
| conda activate MHKIT_CONDA_ENV | |
| python -c "import mhkit; print(mhkit.__version__)" | |
| - name: Verify MHKiT-Python Operation | |
| shell: bash -l {0} | |
| run: | | |
| conda activate MHKIT_CONDA_ENV | |
| python -c "import mhkit; [ED, AP] = mhkit.river.performance.circular(30); print(ED); print(AP);" | |
| - name: Download mhkit_webread_cache artifact | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: mhkit_webread_cache | |
| path: mhkit_webread_cache | |
| - name: Display structure mhkit_webread_cache | |
| run: ls -R | |
| working-directory: . | |
| - name: Set up MATLAB | |
| uses: matlab-actions/setup-matlab@v2-beta | |
| with: | |
| release: ${{ matrix.matlab-version }} | |
| # OutOfProcess is required to properly call netcdf/hdf5 and works reliably on macos and ubuntu | |
| - name: Configure MATLAB Python Environment | |
| shell: bash -l {0} | |
| run: | | |
| conda activate MHKIT_CONDA_ENV | |
| printf 'pyenv(Version="%s", ExecutionMode="OutOfProcess")\n' $(python -c "import sys; print(sys.executable)") > run.m | |
| - name: Add MATLAB test commands | |
| shell: bash | |
| run: echo "version, | |
| addpath(genpath('mhkit')), | |
| import matlab.unittest.TestSuite, | |
| import matlab.unittest.TestRunner, | |
| testFolder = ['mhkit' filesep 'tests'], | |
| suite = TestSuite.fromFolder(testFolder), | |
| runner = TestRunner.withTextOutput, | |
| results = runner.run(suite), | |
| assertSuccess(results)" >> run.m | |
| - name: Output run.m | |
| shell: bash | |
| run: cat run.m | |
| # This is a good idea but does not work because you cannot explicitly set the python execution mode | |
| # - name: Run MHKiT-MATLAB Unit Tests | |
| # uses: matlab-actions/run-tests@v1 | |
| # with: | |
| # select-by-folder: mhkit/tests | |
| - name: Run MATLAB Unit Tests | |
| uses: matlab-actions/run-command@v1 | |
| with: | |
| command: run | |
| startup-options: -noFigureWindows | |