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Pull requests: MIC-DKFZ/nnUNet

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Pull requests list

Perf: Use empty instead of zeros for array initialization
#2982 opened Jan 23, 2026 by ancestor-mithril Loading…
Added command line argument --not_on_device to disable perform_everything_on_device during inference.
#2980 opened Jan 23, 2026 by ancestor-mithril Loading…
Log actual augmentation transforms in debug.json
#2973 opened Jan 7, 2026 by Copilot AI Loading…
1
@FabianIsensee @TaWald
3
Update error message for missing dataset in extract fingerprint
#2958 opened Dec 1, 2025 by hammb Loading…
@FabianIsensee
add MkDocs configuration and build workflow for documentation
#2957 opened Nov 30, 2025 by Borda Loading…
@FabianIsensee
2
add pre-commit config with standard hooks, Ruff, and codespell
#2956 opened Nov 30, 2025 by Borda Loading…
@FabianIsensee
2
Feat/gpu augmentations
#2944 opened Nov 18, 2025 by etienne87 Loading…
@FabianIsensee
Make normalization stable when target_dtype is float16
#2941 opened Nov 12, 2025 by nucli-vicky Loading…
@FabianIsensee
Allow passing kwargs to image reader/writer
#2939 opened Nov 12, 2025 by GFabien Loading…
@FabianIsensee
1
Fix: calculate num_iterations_per_epoch dynamically in nnUNetTrainer
#2928 opened Oct 24, 2025 by mohamedbassem6 Loading…
@FabianIsensee
FIX: print logs when training early end due to an exception when training with nnUNetTrainerBenchmark_5epochs and nnUNetTrainerBenchmark_5epochs_noDataLoading
#2926 opened Oct 24, 2025 by Leirbag-gabrieL Loading…
@FabianIsensee
1
Fix for "One or more background workers are no longer alive. Exiting" errors
#2910 opened Sep 23, 2025 by MikeUU332 Loading…
@FabianIsensee
add possibility for external nnUNet trainers
#2890 opened Aug 13, 2025 by sten2lu Loading…
@FabianIsensee
1
Fix Windows CI
#2886 opened Aug 8, 2025 by dyollb Loading…
@FabianIsensee
Remove forced HTTP 1.0 for model download
#2879 opened Jul 27, 2025 by ASHISRAVINDRAN Loading…
@FabianIsensee
Determinism implementation in nnunet
#2871 opened Jul 18, 2025 by Luugaaa Loading…
@FabianIsensee
1
Update how_to_use_nnunet.md
#2864 opened Jul 15, 2025 by labode Loading…
@FabianIsensee
Fixing a bug in predict_from_files_sequential for 3d_cascaded_fullres models
#2862 opened Jul 15, 2025 by helrewaidy Loading…
@FabianIsensee
Initialize predictor from individual path
#2861 opened Jul 14, 2025 by MattTheCuber Loading…
@FabianIsensee
fix copying dataset.json to output_folder in ensemble_folders function
#2857 opened Jul 7, 2025 by hxviet Loading…
@FabianIsensee
(very) minor fix in ZScore Norm
#2850 opened Jun 27, 2025 by vcasellesb Loading…
@FabianIsensee
Nn u net fredrik
#2848 opened Jun 27, 2025 by OlofssonFredrik Loading…
@FabianIsensee
2
CLI Catalog
#2834 opened Jun 5, 2025 by vmiller987 Loading…
@FabianIsensee
Fixed a bug in preprocessing in crop_to_nonzero. #2796
#2824 opened May 26, 2025 by kreininmv Loading…
@FabianIsensee
2
Feature/bottleneck embeddings
#2676 opened Jan 27, 2025 by eliotbehr Loading…
@FabianIsensee
1
ProTip! What’s not been updated in a month: updated:<2026-01-05.