Code to replicate analyses and figures of REF & LINK TO PAPER.
C. elegans data can be accessed on WormAtlas.org under "Neuronal Connectivity II: by L.R. Varshney, B.L. Chen, E. Paniagua, D.H. Hall and D.B. Chklovskii" (see Varshney et al., 2011 for more information).
- Numpy
- Matplotlib
- Networkx
- Scikit-Learn
The Bimodularity-Figures.ipynb notebook:
- generates the canonical graphs,
- loads the C. elegans data,
- computes the bimodularity analyses,
- and creates all the figures in the article.
The Bimodularity-Supplementary.ipynb notebook:
- creates all the supplementary figures in the article.
Both notebooks are self-sufficient and should run when using the run all command.