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@Molmed

Uppsala University, Department of Medical Sciences, Molecular Precision Medicine

Molecular Precision Medicine research group and the SNP&SEQ Technology Platform

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  1. irma-scripts irma-scripts Public

    Stand-alone scripts deployed to Irma

    Python 6

Repositories

Showing 10 of 62 repositories
  • conformist Public

    A conformal prediction framework implementing conformal risk control.

    Molmed/conformist’s past year of commit activity
    Python 2 MIT 0 1 0 Updated Nov 7, 2024
  • ALLCoP Public

    Conformal prediction for acute lymphoblastic leukemia (ALL) RNA-seq classifiers

    Molmed/ALLCoP’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Nov 7, 2024
  • allium_prepro Public

    Tools to preprocess gene expression and DNA methylation data for prediction using the ALLIUM classifier.

    Molmed/allium_prepro’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Nov 3, 2024
  • sis_style_checksums_nextflow Public

    A Nextflow pipeline to generate sisyphus-style checksums

    Molmed/sis_style_checksums_nextflow’s past year of commit activity
    Nextflow 0 MIT 2 0 0 Updated Oct 30, 2024
  • allium Public

    ALLIUM modifications for the ALLoy project (a private fork of Krali_2023)

    Molmed/allium’s past year of commit activity
    R 0 MIT 0 0 0 Updated Oct 16, 2024
  • Krali_2023 Public
    Molmed/Krali_2023’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Oct 11, 2024
  • gene-thesaurus Public

    Translates from older gene name aliases to the current HGNC standard gene name

    Molmed/gene-thesaurus’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Oct 9, 2024
  • seqreports Public

    This is a Nextflow pipeline for generating sequencing reports for the SNP&Seq Technology platform, NGI Uppsala, SciLifelab Genomics.

    Molmed/seqreports’s past year of commit activity
    Python 1 10 0 0 Updated Sep 30, 2024
  • SDashboard Public archive

    A visualization app written in Shiny to show sequencing metrics

    Molmed/SDashboard’s past year of commit activity
    R 0 MIT 5 0 0 Updated Sep 25, 2024
  • checkQC Public

    CheckQC inspects the content of an Illumina runfolder and determines if it passes a set of quality criteria

    Molmed/checkQC’s past year of commit activity
    Python 25 GPL-3.0 16 10 (2 issues need help) 0 Updated Sep 12, 2024
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