Fetch data

1. Download ERA5 for Spain (@epou) -> ./data/era5/spain/YYYY-MM-DD.grib
2. Convert ERA5 grib to CSV format applying a clipping mask for Spain (@CatuCerecedo)

   R data/era5/grib2csv.R
   	--input ./data/era5/spain/YYYY-MM-DD.grib
   	--boundary_mask ./data/boundaries/gadm41_ESP_simplified.gpkg
   	--boundary_column_id code
   	--output ./data/era5/spain/YYYY-MM-DD.csv
   

3. Fetch bite reports (@epou) -> ./data/bite_reports/YYYY-MM-DD.csv
4. (Once) Download CORINE landcover -> ./data/corine_landcover/u2018.....tif
5. (Once) Apply Spain mask to CORINE landcover (@CatuCerecedo) -> ./data/corine_landcover/u2018.....csv

Models

Bite BRSM model0

Data preparation

1. Apply lags to ERA5 data (@CatuCerecedo)

   R models/bites_brms0/preprocess/process_era5.R
   	--era5_dir ./data/era5/spain/
   	--format 'YYYY-MM-DD.csv'
   	--output ./outputs/bites_brsm0/processed_era5/YYYY-MM-DD.csv
   

2. Generate features (@CatuCerecedo)

   R models/bites_brms0/preprocess/generate_features.R
   	--bites_csv ./data/bite_reports/YYYY-MM-DD.csv
   	--boundary_mask ./data/boundaries/gadm41_ESP_simplified.gpkg 
   	--boundary_column_id code 
   	--landcover_csv ./data/corine_landcover/u2018.....csv 
   	--era5_csv ./outputs/bites_brsm0/processed_era5/YYYY-MM-DD.csv
   	--output ./outputs/bites_brsm0/features/YYYY-MM-DD.csv 
   

Train

1. Concat multiple daily features (@CatuCerecedo)

	R models/bites_brms0/preprocess/concat_features.R
		--features_dir ./outputs/bites_brsm0/features/
		--format 'YYYY-MM-DD.csv'
		--from_date 2020-01-01
		--to_date 2025-01-02
		--output ./outputs/bites_brsm0/features/last_concat.csv 

2. Train (@CatuCerecedo)

	R models/bites_brms0/train.R
		--data ./outputs/bites_brsm0/features/last_concat.csv 
		--output_dir ./output/bites_brsm0/model/train.rds

Predict

1. Predict (@CatuCerecedo)

	R predict.R
		--model_rds ./output/bites_brsm0/model/train.rds
		--landcover_csv ./data/corine_landcover/u2018.....csv 
		--era_csv ./data/era5/spain/YYYY-MM-DD.csv
		--output ./output/bites_brsm0/predictions/YYYY-MM-DD.csv