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Make command-line invocation of SSIT pipelines platform-agnostic

Status: Open.

#29 In MunskyGroup/SSIT;

· dmitrisvetlov opened on Jul 23, 2025

Fix and/or clarify data filename parameter of formPropensitiesGeneral

bugSomething isn't workingSomething isn't working

help wantedExtra attention is neededExtra attention is needed

questionFurther information is requestedFurther information is requested

Status: Open.

#28 In MunskyGroup/SSIT;

· dmitrisvetlov opened on Jun 16, 2025

Add logical column for SSIT.parameters to either fit or keep at initial values

enhancementNew feature or requestNew feature or request

short-termNot a bug nor requiring a refactor, but will provide dramatic improvementNot a bug nor requiring a refactor, but will provide dramatic improvement

Status: Open.

Feature

#25 In MunskyGroup/SSIT;

· alexpopinga opened on Apr 11, 2025

Update figure calls to avoid stealing focus

enhancementNew feature or requestNew feature or request

good first issueGood for newcomersGood for newcomers

Status: Open.

Feature

#22 In MunskyGroup/SSIT;

· Munsky opened on Mar 17, 2025

Add generalised convolution method in SSIT

enhancementNew feature or requestNew feature or request

Status: Open.

Feature

#20 In MunskyGroup/SSIT;

· alexpopinga opened on Jan 23, 2025

Add routines for non-standard reactions - Division Dilution

enhancementNew feature or requestNew feature or request

Status: Open.

#17 In MunskyGroup/SSIT;

· Munsky opened on Sep 27, 2024

Add rouitines for non-standard reaction type: Geometric Bursts.

enhancementNew feature or requestNew feature or request

Status: Open.

#16 In MunskyGroup/SSIT;

· Munsky opened on Sep 27, 2024

Include all modern MATLAB versions in automated testing

Status: Open.

#14 In MunskyGroup/SSIT;

· dmitrisvetlov opened on Sep 15, 2024

Create separate file to run Metropolis-Hastings using objective function in RonModelPipelineJuly11_2024.m

enhancementNew feature or requestNew feature or request

Status: Open.

#11 In MunskyGroup/SSIT;

· alexpopinga opened on Jul 25, 2024

Add FIM proposal capability to Bursting Gene MCMC and compare computational efficiency to Stan

enhancementNew feature or requestNew feature or request

long-termNot urgentNot urgent

Status: Open.

Feature

#7 In MunskyGroup/SSIT;

· alexpopinga opened on Jul 12, 2024