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@NBISweden

NBIS - National Bioinformatics Infrastructure Sweden

NBIS is a distributed national bioinformatics infrastructure, supporting life sciences in Sweden.

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  1. MrBayes MrBayes Public

    MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. For documentation and downloading the program, please see the home page:

    C 238 79

  2. EMBLmyGFF3 EMBLmyGFF3 Public

    An efficient way to convert gff3 annotation files into EMBL format ready to submit.

    Python 59 15

  3. development-guidelines development-guidelines Public

    Development guidlines for software within NBIS.

    17 9

  4. excelerate-scRNAseq excelerate-scRNAseq Public

    Single RNA-seq data analysis with R (Finland, May, 2019)

    HTML 218 108

  5. GAAS GAAS Public

    Genome Assembly and Annotation Service code

    Perl 206 47

  6. IgDiscover-legacy IgDiscover-legacy Public archive

    Analyze antibody repertoires and discover new V genes from high-throughput sequencing reads

    Python 17 10

Repositories

Showing 10 of 305 repositories
  • sda-cli Public

    User command line interface for the SDA

    NBISweden/sda-cli’s past year of commit activity
    Go 5 AGPL-3.0 1 45 1 Updated Jan 10, 2025
  • fungal-trans Public

    A Snakemake workflow for fungal metatranscriptomics

    NBISweden/fungal-trans’s past year of commit activity
    Python 4 MIT 4 1 0 Updated Jan 10, 2025
  • AGAT Public

    Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/

    NBISweden/AGAT’s past year of commit activity
    Perl 476 GPL-3.0 58 17 (1 issue needs help) 0 Updated Jan 10, 2025
  • Sloppymerase Public

    Find single-stranded DNA breaks with an error-prone DNA polymerase

    NBISweden/Sloppymerase’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jan 10, 2025
  • raukr-2025 Public

    Raukr 2025 • NBIS Summer School • R Beyond the Basics

    NBISweden/raukr-2025’s past year of commit activity
    Lua 0 GPL-3.0 0 0 0 Updated Jan 10, 2025
  • workshop-scRNAseq-devel Public Forked from NBISweden/workshop-scRNAseq

    Single cell RNA sequencing analysis course

    NBISweden/workshop-scRNAseq-devel’s past year of commit activity
    HTML 0 101 3 0 Updated Jan 10, 2025
  • sdafs Public

    FUSE file system driver for the sensitive data archive

    NBISweden/sdafs’s past year of commit activity
    Go 0 MIT 0 0 0 Updated Jan 10, 2025
  • confluence-server-to-cloud-utils Public

    Various scripts used when migrating a Confluence Server instance to a Confluence Cloud instance.

    NBISweden/confluence-server-to-cloud-utils’s past year of commit activity
    Python 2 0 0 0 Updated Jan 9, 2025
  • NBIS-support-framework Public template

    A framework for support projects, including templates for reports, data management as well as links to tools and pipelines

    NBISweden/NBIS-support-framework’s past year of commit activity
    8 0 0 0 Updated Jan 9, 2025
  • workshop-reproducible-research Public

    NBIS/Elixir course: Tools for Reproducible Research

    NBISweden/workshop-reproducible-research’s past year of commit activity
    HTML 62 CC-BY-4.0 32 9 0 Updated Jan 9, 2025
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