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@NBISweden

NBIS - National Bioinformatics Infrastructure Sweden

NBIS is a distributed national bioinformatics infrastructure, supporting life sciences in Sweden.
README.md

About

A distributed national bioinformatics infrastructure supporting life sciences in Sweden

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  1. MrBayes MrBayes Public

    MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. For documentation and downloading the program, please see the home page:

    C 253 82

  2. EMBLmyGFF3 EMBLmyGFF3 Public

    An efficient way to convert gff3 annotation files into EMBL format ready to submit.

    Python 62 16

  3. development-guidelines development-guidelines Public

    Development guidlines for software within NBIS.

    18 9

  4. excelerate-scRNAseq excelerate-scRNAseq Public

    Single RNA-seq data analysis with R (Finland, May, 2019)

    HTML 226 106

  5. GAAS GAAS Public

    Genome Assembly and Annotation Service code

    Perl 215 47

  6. IgDiscover-legacy IgDiscover-legacy Public archive

    Analyze antibody repertoires and discover new V genes from high-throughput sequencing reads

    Python 16 10

Repositories

Showing 10 of 344 repositories
  • data-submission-documentation Public

    Documentation for data submissions from life science research in public repositories

    NBISweden/data-submission-documentation’s past year of commit activity
    Python 4 0 0 0 Updated Oct 15, 2025
  • bird-ringing Public

    Web-based interface and database for managing bird-ringing data

    NBISweden/bird-ringing’s past year of commit activity
    Shell 1 MIT 0 15 1 Updated Oct 15, 2025
  • psc-atlas Public
    NBISweden/psc-atlas’s past year of commit activity
    Dockerfile 0 MIT 0 16 1 Updated Oct 15, 2025
  • urdr Public

    Timelogging system of NBIS

    NBISweden/urdr’s past year of commit activity
    TypeScript 0 AGPL-3.0 1 54 (1 issue needs help) 0 Updated Oct 15, 2025
  • redmine_utils Public

    Various script used to manage Redmine.

    NBISweden/redmine_utils’s past year of commit activity
    Python 0 0 0 0 Updated Oct 15, 2025
  • SCoRe_user_doc Public

    SCoRe user documentation

    NBISweden/SCoRe_user_doc’s past year of commit activity
    Shell 0 GPL-3.0 0 4 0 Updated Oct 15, 2025
  • assembly-project-template Public template

    This is a template for all assembly projects. Please read the instructions below on how to use it.

    NBISweden/assembly-project-template’s past year of commit activity
    Shell 3 MIT 2 5 0 Updated Oct 14, 2025
  • rda-gorc-im Public

    GORC International Model visualisation

    NBISweden/rda-gorc-im’s past year of commit activity
    JavaScript 0 1 10 0 Updated Oct 14, 2025
  • Training-Tech-shorts Public

    Short lessons, training various Research Software Engineering tools useful to our work.

    NBISweden/Training-Tech-shorts’s past year of commit activity
    Markdown 9 14 50 2 Updated Oct 14, 2025
  • scirnaseq Public

    sciRNAseq3 pipeline

    NBISweden/scirnaseq’s past year of commit activity
    Python 2 MIT 0 1 0 Updated Oct 14, 2025
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