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Describe the bug
The pipeline creates two assembly files in the corresponding output directory 03_assembly/hifiasm-raw-default:
-rw-r--r-- 1 pippel pg_snic2021-6-194 101M Nov 1 17:45 hifiasm-raw-default.asm.bp.p_ctg.fasta.gz
-rw-r--r-- 1 pippel pg_snic2021-6-194 92M Nov 1 17:46 hifiasm-raw-default.asm.bp.p_ctg.fasta.fasta.gz
Which is not necessary they contain the same information one is folded and the other one has the full contig sequnce on one line.
We just need the folded one.
To Reproduce
Steps to reproduce the behavior:
Run the ASSEMBLE_HIFI subworkflow in default mode.
Expected behavior
Only one file should be published.
Solution
Just publish the fasta file from the GFATOOLS_GFA2FA process and exclude it from the HIFIASM process.
The text was updated successfully, but these errors were encountered:
Describe the bug
The pipeline creates two assembly files in the corresponding output directory
03_assembly/hifiasm-raw-default
:Which is not necessary they contain the same information one is folded and the other one has the full contig sequnce on one line.
We just need the folded one.
To Reproduce
Steps to reproduce the behavior:
Run the ASSEMBLE_HIFI subworkflow in default mode.
Expected behavior
Only one file should be published.
Solution
Just publish the fasta file from the GFATOOLS_GFA2FA process and exclude it from the HIFIASM process.
The text was updated successfully, but these errors were encountered: