Unified wrf/wrf-chem model_mod

[hkershaw-brown]

Description:

Refactored WRF model mod for WRF & WRF CHEM.
Namelist selectable QTYS, see #404 for details.

Created a wrf_unified model directory. This is to allow concurrent development on wrf and wrf_unified.
wrf_unified/model_mod is ~4500 less than the wrf/model_mod and this is a bit of a headache for keeping up-to-date with main (easy to miss changes in such differing code).

See pull #683 for original pull request
wrf-wrf-chem branch available at https://github.com/hkershaw-brown/DART/tree/wrf-wrf-chem

Fixes issue

Fixes #404
Partial #359 (WRF)
Partial #624 (WRF)

To do:
Follow fixes for #811, #807 from wrf model_mod

Types of changes

• Bug fix (non-breaking change which fixes an issue)
• New feature (non-breaking change which adds functionality)
• Breaking change (fix or feature that would cause existing functionality to not work as expected)
• Documentation update

Documentation changes needed?

• My change requires a change to the documentation.
  • I have updated the documentation accordingly.

Tests

Please describe any tests you ran to verify your changes.
Bitwise tests during refactoring

Checklist for merging

• Updated changelog entry
• Documentation updated
• Update conf.py

Checklist for release

• Merge into main
• Create release from the main branch with appropriate tag
• Delete feature-branch

Testing Datasets

• Dataset needed for testing available upon request
• Dataset download instructions included
• No dataset needed

[hkershaw-brown]

For un reviewed atmos-chem forward operators see #743

[Copilot]

Pull Request Overview

This pull request refactors the WRF model_mod for both WRF and WRF CHEM by introducing a unified model_mod and updating corresponding documentation and configuration files. Key changes include:

• Addition of a build script (quickbuild.sh) in the wrf_unified directory.
• Extensive documentation updates in readme.rst describing the unified model and its configuration.
• A new model_mod.nml file with updated configuration and minor comment updates to observation modules.

Reviewed Changes

Copilot reviewed 8 out of 8 changed files in this pull request and generated 1 comment.

Show a summary per file

File	Description
models/wrf_unified/work/quickbuild.sh	Introduces a build script for the new unified model
models/wrf_unified/readme.rst	Provides documentation updates for the unified WRF model interface
models/wrf_unified/model_mod.nml	Defines new namelist settings for the unified model_mod
assimilation_code/modules/observations/default_quantities_mod.f90	Updates observation quantities comments with a new potential temperature entry
assimilation_code/modules/observations/atmosphere_quantities_mod.f90	Updates observation quantities comments with a new potential temperature entry

Comments suppressed due to low confidence (2)

assimilation_code/modules/observations/default_quantities_mod.f90:14

• [nitpick] Consider adding a brief comment that explains the rationale behind adding QTY_2M_POTENTIAL_TEMPERATURE to the observation quantities documentation.

!   QTY_2M_POTENTIAL_TEMPERATURE

assimilation_code/modules/observations/atmosphere_quantities_mod.f90:107

• [nitpick] Consider adding documentation for the inclusion of QTY_2M_POTENTIAL_TEMPERATURE to clarify its intended use and context in the module.

!   QTY_2M_POTENTIAL_TEMPERATURE

[hkershaw-brown]

Closing since this is a year+ without review, and this branch is probably about to get noisy with high-res wrf-chem & separate met & emissions files.