Github unit testing workflow using CTSM container #6

	name: Run unit tests with ctsm

	on:
	pull_request:

	jobs:
	ctsm-unit-test:
	runs-on: ubuntu-latest
	container:
	image: ghcr.io/ngeet/containers/unit-test-ctsm:latest
	env:
	TESTING_DIR: /CTSM/src/fates/testing/
	BRANCH_NAME: ${{ github.head_ref }}
	BRANCH_URL: ${{ github.event.pull_request.head.repo.html_url }}

	steps:
	- name: Checkout code with git-fleximod
	run: \|
	cd /CTSM
	./bin/git-fleximod update

	- name: Echo some output
	run: \|
	echo "HOSTNAME: $HOSTNAME"
	echo "HOME: $HOME"

	- name: Set up conda environment
	uses: conda-incubator/setup-miniconda@v2
	with:
	miniconda-version: 'latest'
	activate-environment: testing
	environment-file: ${{env.TESTING_DIR}}/testing.yml
	channels: conda-forge, defaults

	- name: Activate spack environment and run tests
	run: \|
	. /opt/spack-environment/activate.sh
	echo "NETCDF_FORTRAN_PATH: $NETCDF_FORTRAN_PATH"
	echo "NETCDF_C_PATH: $NETCDF_C_PATH"
	cd ${{env.TESTING_DIR}}
	python run_unit_tests.py --test-list fire_fuel

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