Github unit testing workflow using CTSM container #10

	name: Run unit tests with ctsm

	on:
	pull_request:

	jobs:
	ctsm-unit-test:
	runs-on: ubuntu-latest
	env:
	TESTING_DIR: /CTSM/src/fates/testing/
	container:
	image: ghcr.io/ngeet/containers/unit-test-ctsm:latest
	env:
	BRANCH_NAME: ${{ github.head_ref }}
	BRANCH_URL: ${{ github.event.pull_request.head.repo.html_url }}

	steps:
	- name: Checkout code with git-fleximod
	run: \|
	cd /CTSM
	./bin/git-fleximod update

	# Install conda environment packages
	- name: Install conda environment
	run: \|
	conda env create --file ${{env.TESTING_DIR}}/testing.yml -y

	- name: Activate spack and conda environments and run tests
	run: \|
	conda activate testing
	. /opt/spack-environment/activate.sh
	echo "CONDA_PREFIX: $CONDA_PREFIX"
	echo "NETCDF_FORTRAN_PATH: $NETCDF_FORTRAN_PATH"
	echo "NETCDF_C_PATH: $NETCDF_C_PATH"
	cd ${{env.TESTING_DIR}}
	python run_unit_tests.py --test-list fire_fuel

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