biomero-converter

Conversion from various formats to Ome-tiff and Ome-zarr

This tool can be used as biomero plugin, Docker container or stand-alone

Features

Extract and process image data including bioformats unsupported formats
- Tiff
- Ome-zarr
- ImageXpress Pico
- Molecular Devices
- CellReporterXpress experiment
- image db files
- isyntax files
- Incucyte archives (.icharch)
Export to Ome formats
- Ome-tiff
- Ome-zarr
Supporting
- (Large) whole slide images
- Screen Plate Well / High Content Screening format
Compatible with Omero

Name		Name	Last commit message	Last commit date
Latest commit History 161 Commits
.github/workflows		.github/workflows
docs		docs
src		src
test		test
.gitattributes		.gitattributes
.gitignore		.gitignore
Dockerfile		Dockerfile
README.md		README.md
converter.py		converter.py
environment.yml		environment.yml
main.py		main.py
mkdocs.yml		mkdocs.yml
pixi.lock		pixi.lock
pixi.toml		pixi.toml
requirements.txt		requirements.txt