Process aerosol analysis in grib2 format via UPP in GCAFS #8996
Workflow file for this run
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| name: CI Unit Tests | |
| on: [pull_request, push, workflow_dispatch] | |
| env: | |
| ROCOTO_VERSION: "1.3.7" | |
| HPC_ACCOUNT: "fv3-cpu" | |
| jobs: | |
| ci_pytest: | |
| runs-on: ubuntu-22.04 | |
| steps: | |
| - name: Checkout global-workflow | |
| uses: actions/checkout@v4 | |
| with: | |
| path: global-workflow | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: 3.11.8 | |
| - name: Install APT packages | |
| id: install-apt | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y perl libxml-libxml-perl libxml-libxslt-perl libdatetime-perl | |
| - name: Install python dependencies | |
| id: install-pydeps | |
| run: | | |
| python -m pip install --upgrade pip | |
| sed -i '/^wxflow[>=<].*/d' global-workflow/dev/workflow/requirements.txt | |
| python -m pip install -r global-workflow/dev/workflow/requirements.txt | |
| pip install pytest pytest-cov pytest-mock wget | |
| - name: Cache Rocoto | |
| id: cache-rocoto | |
| uses: actions/cache@v4 | |
| with: | |
| path: | | |
| rocoto-${{ env.ROCOTO_VERSION }} | |
| key: ${{ runner.os }}-rocoto-${{ env.ROCOTO_VERSION }} | |
| - name: Install Rocoto | |
| id: install-rocoto | |
| if: steps.cache-rocoto.outputs.cache-hit != 'true' | |
| run: | | |
| git clone https://github.com/christopherwharrop/rocoto.git rocoto-${{ env.ROCOTO_VERSION }} | |
| cd rocoto-${{ env.ROCOTO_VERSION }} | |
| git checkout ${{ env.ROCOTO_VERSION }} | |
| ./INSTALL | |
| echo "export PATH=${PWD}/bin:\$PATH" >> rocoto_path.sh | |
| chmod +x rocoto_path.sh | |
| - name: Run tests | |
| shell: bash | |
| run: | | |
| sudo mkdir -p /scratch3/NCEPDEV | |
| sudo mkdir -p /scratch3/NCEPDEV/stmp | |
| sudo mkdir -p /scratch3/NCEPDEV/global | |
| sudo chmod -R a+w /scratch3/NCEPDEV | |
| source rocoto-${{ env.ROCOTO_VERSION }}/rocoto_path.sh | |
| cd global-workflow/sorc | |
| git submodule update --init -j 2 ufs_model.fd gsi_monitor.fd wxflow | |
| ./link_workflow.sh | |
| export PYTHONPATH="${PYTHONPATH:+${PYTHONPATH}:}${PWD}/wxflow/src" | |
| # Create test data directory for unit tests | |
| mkdir -p ../dev/ci/scripts/unittests/test_data | |
| echo "Creating test directories and files for CI tests" | |
| cd ../dev/ci/scripts/unittests | |
| pytest -v --junitxml test-results.xml | |
| - name: Publish Test Results | |
| if: always() | |
| uses: EnricoMi/publish-unit-test-result-action@v2 | |
| with: | |
| files: global-workflow/dev/ci/scripts/unittests/test-results.xml | |
| job_summary: true | |
| comment_mode: off |