2025.03

What's Changed

• add conditional skips for build tests and updates to run podman in CI by @rem1776 in #344
• Analysis fix by @singhd789 in #396
• add link time optimization option as a target by @rem1776 in #411
• License update by @thomas-robinson in #405
• CMORgasbord: 321.fix.ocean.grid.case.and.add.args by @ilaflott in #403
• Ppvalidate by @Ciheim in #408
• Minor logic correction by @Ciheim in #418
• Monthly climatology.391 by @kiihne-noaa in #401
• 335.Reduce clunky names of fre make tools and clean up doc by @singhd789 in #419
• 394.fix.split.netcdf by @cwhitlock-NOAA in #413
• Updates for proposed changes to PP yaml format by @J-Lentz in #421
• Do not quote lists in rose-suite.conf by @ceblanton in #425
• Raising an error instead of exiting 1 + Better error message by @Ciheim in #422
• hotfix: click 8.2.0 breaks tests by @ilaflott in #430
• Removes parallel checkout for containers by @thomas-robinson in #398
• Update fre-version for whenever we are ready by @singhd789 in #431
• Regridding updates from a checkpoint by @ceblanton in #432

New Contributors

• @J-Lentz made their first contribution in #421

Full Changelog: 2025.02...2025.03

2025.02

What's Changed

• Update README.md by @ilaflott in #364
• Do not create a combined yaml file anymore by @singhd789 in #348
• New subtool: fre pp nccheck by @Ciheim in #367
• Adds a link to the execution script in the container to the second stage of the dockerfile by @thomas-robinson in #372
• #345 Adding Sphinx page for PPP by @Ciheim in #349
• CMORgasbord: yaml parsing by @ilaflott in #368
• Merging in main by @Ciheim in #376
• 346.no comb file fre make by @singhd789 in #370
• Various by @ceblanton in #374
• CMORgasbord: yaml-munging changes, file/directory/component targeting, amongst other changes by @ilaflott in #375
• Fix rose apps by @singhd789 in #380
• Update gfdl-msd-schema submodule by @singhd789 in #382
• Remove standard deviation feature from fre pp gen-time-averages by @ceblanton in #383
• add option to skip .sif transfers and allow for relative mkmf template paths by @rem1776 in #343
• Require python 3.10 and remove cylc-uiserver as a dependency by @ceblanton in #384
• Combine yamls fix by @singhd789 in #388
• New subtool: Fre pp histval by @Ciheim in #377
• climatology Timeavg remake by @kiihne-noaa in #373
• Update submodule by @singhd789 in #392
• STATIC: Add static source format to yaml documentation (and update docs) by @singhd789 in #389
• 386.Add fre list pp-components tool by @singhd789 in #387
• Update package release and corresponding tests to 2025.02 by @ceblanton in #393

Full Changelog: 2025.01.02...2025.02

2025.01.02

What's Changed

• update local branch for change in fre make command names by @kiihne-noaa in #296
• trying to fix errors from bad merge by @kiihne-noaa in #316
• merging main in, before doing the reverse by @kiihne-noaa in #337
• Null tests.142 by @kiihne-noaa in #290
• Npc fix by @laurenchilutti in #353
• Cmor and logging and yaml by @ilaflott in #326
• Update pull_request_template.md by @ceblanton in #356
• Patch release 2025.01.02 and documentation by @ceblanton in #365

New Contributors

• @laurenchilutti made their first contribution in #353

Full Changelog: 2025.01.01...2025.01.02

2025.01.01

What's Changed

• Merging in changes from main by @Ciheim in #305
• Fix error message for incorrect platform used by @singhd789 in #304
• change conda build source back to path: . from url: <repo url> by @ilaflott in #310
• Convert bytes to string for proper workflow config comparing (in fre pp install) by @ceblanton in #313
• 162.fix yaml overwrites by @singhd789 in #308
• Updates to 'fre pp run' to account for delay in starting Cylc scheduler by @ceblanton in #318
• Catalog tool verbose flag by @Ciheim in #306
• let fre cmor run process tripolar ocean data by @ilaflott in #303
• fix badge updating by @ilaflott in #325
• 224.fre make compile test by @singhd789 in #295
• Container2step by @thomas-robinson in #300
• Remove symlink to old schema.json file by @singhd789 in #331
• Delete fre/test directory by @ilaflott in #330
• add fre make create-dockerfile test by @rem1776 in #328
• Move additional instructions after waiting for parallel checkouts in… by @singhd789 in #311
• 315.fre list tool by @singhd789 in #329
• Combine pp yamls even if the first one does not define any components by @ceblanton in #342
• Change path for pp yaml schema submodule by @singhd789 in #347
• Update package version to 2025.01.01 by @ceblanton in #327

Full Changelog: 2025.01...2025.01.01

2025.01

FRE 2025.01

FRE 2025.01 offers,

• FRE make compile capability
• FRE pp capability
• FRE cmor tools
• FRE catalog tools
• gfdl_msd_schemas added as submodule

What's Changed

• Update "fre catalog builder" test after upstream CatalogBuilder change by @ceblanton in #192
• Update conda package version to 2024.01 by @ceblanton in #188
• Compile yaml integration and parse correctly by @singhd789 in #168
• #187 Add fremake README back in by @singhd789 in #193
• Update yamltools README.md by @singhd789 in #194
• Merging main into the branch by @Ciheim in #196
• added code of conduct for review by @kiihne-noaa in #160
• Adding catalog documentation by @Ciheim in #195
• Pylint edits by @ilaflott in #198
• Add escape character by @singhd789 in #201
• Update esm4.yaml by @singhd789 in #200
• Add regrid xy by @ilaflott in #199
• remove unused fre/yamltools/[diag_table, data_table, field_table] from fre/yamltools by @ilaflott in #202
• Add null model yaml example by @rem1776 in #185
• fix absolute paths for yaml combiner by @rem1776 in #207
• #183 Add optional fre catalog builder --slow option (default off) by @ceblanton in #184
• Add click bindings for 'fre catalog merge' by @ceblanton in #211
• Update README.md by @singhd789 in #213
• Fix LD_LIBRARY_PATH env. var. name by @singhd789 in #214
• #212 Make compile and checkout scripts executable by @singhd789 in #220
• cmor tool improvements by @ilaflott in #205
• Fix making checkout script executable before running by @singhd789 in #233
• 230.Add decorator functions to pass click options correctly by @singhd789 in #231
• 217 teaching fre cmor to bite by @ilaflott in #218
• Cmor bite wrapup by @ilaflott in #237
• Update fremake.py by @singhd789 in #244
• update function names for run_fremake subcommand by @rem1776 in #246
• 223.fre make makefile test by @singhd789 in #248
• 187.schema submodule by @singhd789 in #253
• some basic doc updates by @ilaflott in #254
• basic doc updates by @ilaflott in #255
• Update fre cmor doc by @ilaflott in #256
• Merging main into branch by @Ciheim in #257
• Update fre cmor doc by @ilaflott in #258
• update CI image and add mkmf for fre make testing by @rem1776 in #245
• Delete some things by @ilaflott in #260
• FRE make documentation update by @singhd789 in #262
• Documentation by @ceblanton in #259
• Yaml dev. and other docs by @singhd789 in #264
• Some more docs by @ceblanton in #263
• fre pp configure-yaml entry-point for click fix, test by @ilaflott in #272
• update esm4p2 and null model yamls for c5 update by @rem1776 in #270
• Checkout edits by @kiihne-noaa in #249
• add gettid flag to null model yaml and pull_request trigger to create_test_conda_build by @rem1776 in #276
• #216 Fix compile log and change some format to f-strings by @singhd789 in #275
• add --execute option to run-fremake by @rem1776 in #271
• add container buildscript creation for createDockerfile by @rem1776 in #277
• rename fre/pp/*.py files to not clash with click cli command names. by @ilaflott in #279
• Fix print statement to reflect full path to combined yaml by @singhd789 in #288
• Remove fc cc by @uramirez8707 in #284
• Fix click decorator calls by @singhd789 in #293
• Update cli doc by @singhd789 in #289
• Add analysis tools by @menzel-gfdl in #273
• add run-fremake tests by @rem1776 in #292
• Fix create_makefile_script.py location message for container build by @singhd789 in #291
• Container base by @thomas-robinson in #281
• Adding reduced ascii file + updating pytest to convert it to binary by @Ciheim in #215

New Contributors

• @uramirez8707 made their first contribution in #284
• @menzel-gfdl made their first contribution in #273
• @thomas-robinson made their first contribution in #281

Full Changelog: 2024.01...2025.01

2024.01

FRE 2024, initial offering

• Compile capability equivalent to FRE Bronx fremake, and then some
• Postprocessing capability mostly equivalent to FRE Bronx frepp
• Catalog tools (version 2024.01.01)
• CMOR tools

What's Changed

• Create meta.yaml by @bcc2761 in #1
• Remove ./build and egg directories, and add standard .gitignore by @ceblanton in #2
• small meta.yaml updates by @ceblanton in #3
• Documentation by @bcc2761 in #4
• fixed up a markdown file appearance issue by @bcc2761 in #5
• renaming of conda package in README by @bcc2761 in #7
• fixed jsonschema issue by @bcc2761 in #8
• workflow Github Actions file attempt by @bcc2761 in #12
• barebone starter frecatalog code by @bcc2761 in #17
• added barebone code for yamltools by @bcc2761 in #18
• commented out meta.yaml by @bcc2761 in #23
• checkout script added and cli functionality implemented by @bcc2761 in #22
• catalog builder files by @bcc2761 in #29
• Update build_conda.yml by @bcc2761 in #30
• XML Configure Implementation by @bcc2761 in #24
• Update meta.yaml by @bcc2761 in #33
• New pp tools by @ceblanton in #35
• Corrected copy-paste mistake while creating click scaffolding for fre pp run by @ceblanton in #38
• 9.configure script update by @singhd789 in #37
• adding notification for which directory cloned into by @cwhitlock-NOAA in #42
• fre pp convert: Remove unneeded check for PATH. by @ceblanton in #47
• testing workflow runner by @bcc2761 in #50
• Add cylc to conda dependencies by @ceblanton in #46
• 57.update configure yaml by @singhd789 in #58
• 61.branch.clone by @cwhitlock-NOAA in #62
• Update meta.yaml by @bcc2761 in #63
• 56.fre pp configure updates by @singhd789 in #65
• Fix rose-suite-exp config file creation by @singhd789 in #68
• Sphinx Documentation by @Ciheim in #51
• FRE cmor run by @ceblanton in #52
• Pressure masking netcdf modifying tool by @ceblanton in #43
• update version by @bcc2761 in #69
• #57 Fix remap and regrid rose-app creation by @singhd789 in #70
• 40.Add fremake tools by @singhd789 in #64
• Documentation for Fremake by @bcc2761 in #71
• updating fremake documentation by @bcc2761 in #72
• Update README-fremake.md by @singhd789 in #73
• fixed checkout print by @bcc2761 in #74
• Refactoring Attempt #1 by @bcc2761 in #67
• renamed run_subtool since there were two of them by @bcc2761 in #76
• Update configureScriptYAML.py by @singhd789 in #77
• Update README.md by @bcc2761 in #78
• Update README-fremake.md by @singhd789 in #79
• Update location and print statements for rose config files by @singhd789 in #80
• Update README.md by @Ciheim in #82
• Update README.md Links by @bcc2761 in #81
• Restore cmor-mixer standalone script usage for developers by @ceblanton in #85
• Fix grid value name for remap and regrid rose apps (for now) by @singhd789 in #86
• Refactoring & README by @bcc2761 in #83
• Add path checking back in for checkout script by @singhd789 in #87
• improvements/updates to configureScriptXML + environment.yml updated by @ilaflott in #91
• Aesthetics & Version flag by @bcc2761 in #92
• Fix probably typo in including cylc-uiserver in meta.yaml by @ceblanton in #95
• Update Documentation by @bcc2761 in #93
• fre make run-fremake fix by @bcc2761 in #96
• PP configure-yaml updates by @ceblanton in #94
• generate-time-averages & some fre make organization by @bcc2761 in #97
• Adding the decision flowchart by @cwhitlock-NOAA in #102
• README Updates by @bcc2761 in #100
• Update meta.yaml by @ilaflott in #105
• 45.call.wo.decorators by @cwhitlock-NOAA in #104
• Update fremake by @singhd789 in #114
• Add back the click decorator for yamlInfo by @ceblanton in #115
• Create CONTRIBUTING.md by @ilaflott in #118
• Initial pytest efforts for cli calls by @ilaflott in #120
• Remove unneeded chdir and print by @ceblanton in #116
• Add issue template, PR template by @ilaflott in #121
• Remove extra write for c[additional instructions] by @singhd789 in #123
• Hotfix doc workflow by @ilaflott in #125
• include pytest-cov meta.yaml by @ilaflott in #126
• Add catalog validate by @ceblanton in #117
• Improve ci workflows by @ilaflott in #127
• 122.cli.separate by @cwhitlock-NOAA in #130
• #99 Make pp yaml more generic by @singhd789 in #101
• switching checkout repo; fixing bug in branch checkout by @cwhitlock-NOAA in #131
• Add.fre.pp.readme by @ilaflott in #129
• make pylint output more easily accessible in CI/CD by @ilaflott in #138
• intakebuilder --> catalogbuilder edits by @ilaflott in #140
• Include quotes in the rose-suite.conf values by @ceblanton in #139
• Locate the experiment pp.yamls relative to the main yaml dir by @ceblanton in #137
• recent main updates --> add_badges branch by @ilaflott in #146
• #141 Add example yamls for fremake testing by @singhd789 in #147
• upgrade the version of sphinx-rtd-theme to fix "style is undefined" by @ceblanton in #148
• Update test_fre_cli.py by @ilaflott in #150
• Update frecatalog.py by @Ciheim in #155
• Create fre/cmor/README.md by @ilaflott in #135
• These tests should NOT fail by @ilaflott in #151
• Add pipeline badges to README! by @ilaflott in #145
• Add fremake test yamls for esm4.2 by @rem1776 in #166
• 161.create combine yaml tool by @singhd789 in #163
• 169.update configure yaml parsing by @singhd789 in #170
• tweak pipeline by @ilaflott in #178
• Fre pp tests tweak by @ilaflott in #181
• Initial CMOR pytest examples by @Ciheim in #172

New Contributors

• @bcc2761 made their first contribution in #1
• @ceblanton made their first contribution in #2
• @singhd789 made their first contribution in #37
• @cwhitlock-NOAA made their first contribution in #42
• @Ciheim made their first contribution in #51
• @ilaflott made their first contribution in #91
• @rem1776 made their first contribution in https://github.com/NOAA-GFDL/fre-cli/p...