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@NationalGenomicsInfrastructure

National Genomics Infrastructure

The Swedish National Genomics Infrastructure (NGI), a technology platform at SciLifeLab, serving primarily Swedish academia.

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  1. miarka-provision miarka-provision Public

    Ansible playbooks for provisioning NGI cluster Miarka

    Jinja 2 12

  2. genomics-status genomics-status Public

    Tornado server for tracking samples at NGI Stockholm

    JavaScript 12 18

  3. ngi_reports ngi_reports Public

    Code to generate reports for use by the NGI in SciLifeLab

    HTML 5 13

  4. MultiQC_NGI MultiQC_NGI Public

    MultiQC plugin for the National Genomics Infrastructure in Stockholm, Sweden.

    Python 3 9

  5. taca-ngi-pipeline taca-ngi-pipeline Public

    Forked from b97pla/taca-ngi-pipeline

    A TACA plugin adding functionality relevant for the ngi_pipeline

    Python 3 13

  6. TACA TACA Public

    Forked from guillermo-carrasco/TACA

    Tool for the Automation of Cleanup and Analyses: tools for projects and data management at NGI Stockholm

    Python 14 16

Repositories

Showing 10 of 43 repositories
  • genomics-status Public

    Tornado server for tracking samples at NGI Stockholm

    NationalGenomicsInfrastructure/genomics-status’s past year of commit activity
    JavaScript 12 MIT 18 0 1 Updated Jan 10, 2025
  • miarka-provision Public

    Ansible playbooks for provisioning NGI cluster Miarka

    NationalGenomicsInfrastructure/miarka-provision’s past year of commit activity
    Jinja 2 12 4 3 Updated Jan 9, 2025
  • scilifelab_epps Public Forked from Galithil/scilifelab_epps

    A collection of Genologics Clarity LIMS EPPs used at Scilifelab.

    NationalGenomicsInfrastructure/scilifelab_epps’s past year of commit activity
    Python 5 14 0 1 Updated Jan 9, 2025
  • ngi_pipeline Public Forked from mariogiov/ngi_pipeline

    Code driving the production pipeline at SciLifeLab

    NationalGenomicsInfrastructure/ngi_pipeline’s past year of commit activity
    Python 6 25 22 0 Updated Jan 9, 2025
  • standalone_scripts Public

    Repository to store standalone scripts that do not belong to any bigger package or repository

    NationalGenomicsInfrastructure/standalone_scripts’s past year of commit activity
    Python 4 MIT 23 0 1 Updated Jan 9, 2025
  • flowcell_parser Public

    Collection of python scripts to parse Illumina (demux with bcl2fastq v2.17+) output

    NationalGenomicsInfrastructure/flowcell_parser’s past year of commit activity
    Python 7 MIT 18 1 0 Updated Jan 9, 2025
  • taca-ngi-pipeline Public Forked from b97pla/taca-ngi-pipeline

    A TACA plugin adding functionality relevant for the ngi_pipeline

    NationalGenomicsInfrastructure/taca-ngi-pipeline’s past year of commit activity
    Python 3 MIT 14 1 1 Updated Jan 9, 2025
  • ngi_reports Public

    Code to generate reports for use by the NGI in SciLifeLab

    NationalGenomicsInfrastructure/ngi_reports’s past year of commit activity
    HTML 5 MIT 13 0 1 Updated Jan 9, 2025
  • LIMS2DB Public Forked from Galithil/LIMS2DB
    NationalGenomicsInfrastructure/LIMS2DB’s past year of commit activity
    Python 1 MIT 12 0 1 Updated Jan 9, 2025
  • DailyRead Public

    The NGI Daily Read

    NationalGenomicsInfrastructure/DailyRead’s past year of commit activity
    Python 0 2 2 1 Updated Jan 9, 2025
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