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@NationalGenomicsInfrastructure

National Genomics Infrastructure

The Swedish National Genomics Infrastructure (NGI), a technology platform at SciLifeLab, serving primarily Swedish academia.

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  1. ngi_pipeline ngi_pipeline Public

    Forked from mariogiov/ngi_pipeline

    Code driving the production pipeline at SciLifeLab

    Python 6 24

  2. miarka-provision miarka-provision Public

    Ansible playbooks for provisioning NGI cluster Miarka

    Jinja 2 12

  3. genomics-status genomics-status Public

    Tornado server for tracking samples at NGI Stockholm

    JavaScript 12 18

  4. ngi_reports ngi_reports Public

    Code to generate reports for use by the NGI in SciLifeLab

    HTML 5 13

  5. MultiQC_NGI MultiQC_NGI Public

    MultiQC plugin for the National Genomics Infrastructure in Stockholm, Sweden.

    Python 3 8

  6. taca-ngi-pipeline taca-ngi-pipeline Public

    Forked from b97pla/taca-ngi-pipeline

    A TACA plugin adding functionality relevant for the ngi_pipeline

    Python 3 13

Repositories

Showing 10 of 38 repositories
  • genomics-status Public

    Tornado server for tracking samples at NGI Stockholm

    NationalGenomicsInfrastructure/genomics-status’s past year of commit activity
    JavaScript 12 MIT 18 0 1 Updated Nov 7, 2024
  • miarka-provision Public

    Ansible playbooks for provisioning NGI cluster Miarka

    NationalGenomicsInfrastructure/miarka-provision’s past year of commit activity
    Jinja 2 12 4 2 Updated Nov 6, 2024
  • ngi_pipeline Public Forked from mariogiov/ngi_pipeline

    Code driving the production pipeline at SciLifeLab

    NationalGenomicsInfrastructure/ngi_pipeline’s past year of commit activity
    Python 6 25 22 0 Updated Nov 6, 2024
  • Yggdrasil Public

    Yggrasil is middleware platform designed to aggregate sample-related metadata, manage the execution of various pipelines for processing sequencing data, and ultimately handle the delivery of analyzed data.

    NationalGenomicsInfrastructure/Yggdrasil’s past year of commit activity
    Python 0 MIT 1 0 0 Updated Oct 31, 2024
  • standalone_scripts Public

    Repository to store standalone scripts that do not belong to any bigger package or repository

    NationalGenomicsInfrastructure/standalone_scripts’s past year of commit activity
    Python 4 MIT 23 0 1 Updated Oct 29, 2024
  • LIMS2DB Public Forked from Galithil/LIMS2DB
    NationalGenomicsInfrastructure/LIMS2DB’s past year of commit activity
    Python 1 MIT 12 0 0 Updated Oct 25, 2024
  • NGI_dashboards Public Forked from ewels/NGI_dashboards

    SciLifeLab NGI Dashboard Code

    NationalGenomicsInfrastructure/NGI_dashboards’s past year of commit activity
    HTML 1 MIT 7 7 (1 issue needs help) 0 Updated Oct 10, 2024
  • MultiQC_NGI Public

    MultiQC plugin for the National Genomics Infrastructure in Stockholm, Sweden.

    NationalGenomicsInfrastructure/MultiQC_NGI’s past year of commit activity
    Python 3 MIT 8 0 0 Updated Oct 8, 2024
  • lims_dashboard Public Forked from Galithil/lims_dashboard
    NationalGenomicsInfrastructure/lims_dashboard’s past year of commit activity
    Python 0 MIT 6 0 0 Updated Oct 5, 2024
  • ngisweden.se Public

    Wordpress theme and plugins for https://ngisweden.se

    NationalGenomicsInfrastructure/ngisweden.se’s past year of commit activity
    PHP 0 MIT 9 1 1 Updated Oct 1, 2024
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