Merge pull request #401 from ssjunnebo/aviti_bugfix

Handle missing PercentMismatch for samples in IndexAssignment.csv

Author: ssjunnebo

VERSIONLOG.md

@@ -1,5 +1,9 @@
 # Scilifelab_epps Version Log
 
+## 20250318.1
+
+Handle missing PercentMismatch for samples in IndexAssignment.csv
+
 ## 20250317.3
 
 Hotfix of 20250317.1, invalid implementation of function.

scripts/manage_demux_stats.py

@@ -862,9 +862,9 @@ def write_demuxfile_aviti(process_stats, demux_id):
                                 row.get("QualityScoreMean", "0") or 0
                             ),
                             "% Perfectbarcode": 100
-                            - float(row.get("PercentMismatch", "0")),
+                            - float(row.get("PercentMismatch", "0") or 0),
                             "% One mismatchbarcode": float(
-                                row.get("PercentMismatch", "0")
+                                row.get("PercentMismatch", "0") or 0
                             ),
                             "Yield (Mbases)": str(
                                 float(row.get("Yield(Gb)", "0")) * 1000