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24 Open 18 Closed
24 Open 18 Closed
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Issues list

Can not find SUVA_CNVs_BIC_LR.txt
#46 opened Aug 11, 2024 by jianyangdu
Error in hclust(d, method = method) : size cannot exceed 65536
#45 opened Jun 15, 2024 by wwYinYin
CONICS Sample Data Availability
#44 opened Jul 29, 2023 by elisafazz
Segmentation fault
#43 opened Jun 2, 2023 by archana433
Error in plotAll
#41 opened Dec 9, 2022 by marie2T
2
Error in getGenePositions
#40 opened Sep 26, 2022 by TM9013
1
Few tumor cell
#39 opened Aug 22, 2022 by sunshine1126
chromosome arm positions of mouse?
#38 opened Dec 26, 2021 by Li-ZhiD
1
detection of CNV in germlines
#37 opened Oct 21, 2021 by lmanchon
1
getGenePositions parameter got the wrong location information
#36 opened Aug 24, 2021 by sunshine1126
3
Can CONICS be used with 3'- tag sequencing methods ?
#34 opened Mar 10, 2021 by moutazhelal
1
Where can I get the chromosome arm positions file for mouse?
#33 opened Jan 12, 2021 by smk5g5
Conicsmat throws an error for filterMatrix()
#32 opened Dec 8, 2020 by biobug16
Issue about CONICSmat in getGenePositions function
#31 opened Nov 17, 2020 by GalaxyYang
CONICS for scATAC-seq
#30 opened Aug 18, 2020 by camiel-m
Issue Running CONICSMat Tutorial Due To Deprecated SCRAN Function
#25 opened Jun 10, 2020 by MayaTalukdar
6
How can we use RPKM or TPM values for prediction of CNVs or tumour cells?
#24 opened Apr 13, 2020 by avln24
How can we set a seed to reproduce the same figure with plotHistogram() in CONICSmat?
#22 opened Mar 11, 2020 by biobug16
Can we select cells with a specific CNV?
#21 opened Feb 27, 2020 by biobug16
Can or should we do batch-correction before parsing the log2cpm to CONICSmat?
#20 opened Feb 12, 2020 by biobug16
Questions about predicted cell types as an optional input for CONICSmat and optimizing number of clusters for heatmap
#19 opened Jan 30, 2020 by avln24
How can we use tpm values provided in GEO datasets for CNV or tumor cell prediction
#18 opened Jan 30, 2020 by biobug16
2
Questions about the input expression matrix and threshold used in plotChromosomeHeatmap
#13 opened Nov 12, 2019 by YiweiNiu
3
error in classify tumor cell and nontumor cell?
#12 opened Jul 31, 2019 by zhumengyan
6
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