Custom template for New Graph Environment Ltd. fish passage reporting.

This template was produced with https://github.com/NewGraphEnvironment/mybookdown-template so all issues in that repo are likely relevant here. See issues at https://github.com/NewGraphEnvironment/mybookdown-template/issues

If we update files common to mybookdown-template we should do it there and update specific files here with:

git remote add upstream https://github.com/NewGraphEnvironment/mybookdown-template.git
git config remote.upstream.pushurl "maybe dont push to the template from here bud"
git fetch upstream
git checkout upstream/master -- path/to/file

See https://stackoverflow.com/questions/24815952/git-pull-from-another-repository

see scripts/run.R

Track version changes in NEWS.md

In order to avoid commit huge files run this in the terminal every once and a while https://stackoverflow.com/questions/4035779/gitignore-by-file-size https://stackoverflow.com/questions/37768376/remove-duplicate-lines-and-overwrite-file-in-same-command

find . -size +50M | sed 's|^\./||g' >> .gitignore; awk '!seen[$0]++' .gitignore | sponge .gitignore

This is a common move to deal with repeated headers in pagedown knitr table outputs when the page breaks. If we don't have an extra <br>

r if(gitbook_on){knitr::asis_output("<br>")} else knitr::asis_output("\\pagebreak<br>")