ALLSorts is a B-Cell Acute Lymphoblastic Leukemia (B-ALL) subtype classifier, taking gene expression counts and making predictions across 18 subtypes and 5 meta-subtypes!
ALLSorts is now published in Blood Advances: https://doi.org/10.1182/bloodadvances.2021005894
To cite ALLSorts v0.3.0:
Breon Schmidt, Lauren M. Brown, Georgina L. Ryland, Andrew Lonsdale, Hansen J. Kosasih,
Louise E. Ludlow, Ian J. Majewski, Piers Blombery, Paul G. Ekert, Nadia M. Davidson,
Alicia Oshlack; ALLSorts: an RNA-Seq subtype classifier for B-cell acute
lymphoblastic leukemia. Blood Adv 2022; 6 (14): 4093–4097. doi: https://doi.org/10.1182/bloodadvances.2021005894
Interested? Great! Please refer to the wiki for further information & documentation.
If you have any problems, let us know via issues and we will get back to you promptly.
To see what's next on the agenda, follow the [Projects development].
IMPORTANT: Please ensure your Plotly version is at least version 4. Previous versions could send your resulting visualisations to their Cloud Studio (https://plotly.com/chart-studio/). This was removed as the default behaviour from 4 onwards, in which plotly is exclusively offline - see here (https://medium.com/plotly/plotly-py-4-0-is-here-offline-only-express-first-displayable-anywhere-fc444e5659ee). Though there are some safeguards in place to prevent previous versions (the installation process enforces a particular version and a check during runtime to check version), just double check for your own sanity!
v0.2.0 - BiorXiv release v0.3.0 - Blood Advances release