Average expression or sum of a gene in single cell data？

[Jingle0814]

Hello,
I want to utilize AllSorts to analyze scRNA-seq data， whether I should take the mean of all cells or the sum of all cells as the expression counts of each gene？

[aliciaoshlack]

We have tried it with summing at the cluster level.

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On Tue, 14 Nov 2023 at 6:56 pm, Jingle0814 ***@***.***> wrote: Hello, I want to utilize AllSorts to analyze scRNA-seq data， whether I should take the mean of all cells or the sum of all cells as the expression counts of each gene？ — Reply to this email directly, view it on GitHub <#17>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/ACFTSATMA3D3TGINFQP2J43YEMP3DAVCNFSM6AAAAAA7KLRMIOVHI2DSMVQWIX3LMV43ASLTON2WKOZRHE4TEMJYGMYTKMY> . You are receiving this because you are subscribed to this thread.Message ID: ***@***.***>

[Jingle0814]

@aliciaoshlack Thanks a lot !