phylo_converter

convert multiple-sequence-alignments to character-state intersection graphs

This code converts a multiple alignments, given in fasta format (one line per species) to the corresponding character-state intersection graph.

build requirements:

• cmake
• boost
• gcc

runtime requirements:

• boost

compile:

1. cmake .
   (optionally, compile with debug support: cmake -DDEBUG=x where x is the debug level (0 ... 5, where 0 means no debugging output))
2. make

install: make install

usage: ma_to_cc <input-file> [output-file] see also ma_to_cc --help