[WIP] Run meta analysis for a settings file API

[koolgax99]

Description

This API /api/ma/run will run a meta analysis if a settings file is provided in the body of the request. The settings file should me send as xml.

Upon successful run of the meta analysis the response will consist the data from the post.distns.MA.Rdata file from the output directory as a list.

Sample request on Postman

Sample settings file
<?xml version="1.0"?> <info> <notes/> <userid>-1</userid> <username/> <date>2022/09/29 15:46:00 +0000</date> </info> <outdir>/data/workflows/PEcAn_99000000004</outdir> <database> <bety> <user>bety</user> <password>bety</password> <host>postgres</host> <port>5432</port> <dbname>bety</dbname> <driver>PostgreSQL</driver> <write>true</write> </bety> <dbfiles>/data/dbfiles</dbfiles> </database> <pfts> <pft> <name>temperate.coniferous</name> </pft> </pfts> <meta.analysis> <iter>3000</iter> <random.effects> <on>FALSE</on> <use_ghs>TRUE</use_ghs> </random.effects> </meta.analysis> <ensemble> <size>1</size> <variable>NPP</variable> <samplingspace> <parameters> <method>uniform</method> </parameters> <met> <method>sampling</method> </met> </samplingspace> </ensemble> <model> <id>1000000014</id> </model> <workflow> <id>99000000004</id> </workflow> <run> <site> <id>772</id> <met.start>1999-01-01 00:00:00</met.start> <met.end>2003-12-31 00:00:00</met.end> </site> <inputs> <met> <id>5000000006</id> </met> </inputs> <start.date>2000/01/01</start.date> <end.date>2000/12/31</end.date> </run> <host> <name>localhost</name> <rabbitmq> <uri>amqp://guest:guest@rabbitmq/%2F</uri> <queue>SIPNET_r136</queue> </rabbitmq> </host>

Sample Output of the API
{ "status": "Meta Analysis ran successfully", "data": [ { "distn": "beta", "parama": 2.63, "paramb": 6.52, "n": 0, "_row": "growth_resp_factor" }, { "distn": "gamma", "parama": 4599.0942, "paramb": 13859.064, "n": 363, "_row": "leaf_turnover_rate" }, { "distn": "gamma", "parama": 130531.937, "paramb": 7335.3038, "_row": "root_respiration_rate" }, { "distn": "norm", "parama": 0.6032, "paramb": 0.0322, "_row": "root_turnover_rate" }, { "distn": "norm", "parama": 16.8391, "paramb": 0.1774, "_row": "Amax" }, { "distn": "norm", "parama": 1.4098, "paramb": 0.0252, "_row": "leaf_respiration_rate_m2" }, { "distn": "gamma", "parama": 1571.2799, "paramb": 303.327, "n": 455, "_row": "SLA" }, { "distn": "norm", "parama": 50.4784, "paramb": 0.182, "n": 291, "_row": "leafC" }, { "distn": "norm", "parama": 0, "paramb": 3, "_row": "Vm_low_temp" }, { "distn": "unif", "parama": 0.6, "paramb": 0.9, "_row": "AmaxFrac" }, { "distn": "unif", "parama": 5, "paramb": 40, "_row": "psnTOpt" }, { "distn": "unif", "parama": 0, "paramb": 100, "_row": "stem_respiration_rate" }, { "distn": "unif", "parama": 0.38, "paramb": 0.62, "_row": "extinction_coefficient" }, { "distn": "unif", "parama": 4, "paramb": 27, "_row": "half_saturation_PAR" }, { "distn": "unif", "parama": 0.01, "paramb": 0.25, "_row": "dVPDSlope" }, { "distn": "unif", "parama": 1, "paramb": 3, "_row": "dVpdExp" }, { "distn": "unif", "parama": 1.4, "paramb": 2.6, "_row": "veg_respiration_Q10" }, { "distn": "unif", "parama": 1.4, "paramb": 5, "_row": "fine_root_respiration_Q10" }, { "distn": "unif", "parama": 1.4, "paramb": 5, "_row": "coarse_root_respiration_Q10" } ] }

Review Time Estimate

• Immediately
• Within one week
• When possible

Types of changes

• Bug fix (non-breaking change which fixes an issue)
• New feature (non-breaking change which adds functionality)
• Breaking change (fix or feature that would cause existing functionality to change)

Checklist:

• My change requires a change to the documentation.
• My name is in the list of CITATION.cff
• I have updated the CHANGELOG.md.
• I have updated the documentation accordingly.
• I have read the CONTRIBUTING document.
• I have added tests to cover my changes.
• All new and existing tests passed.

[koolgax99]

@dlebauer @robkooper Sir can you please review this for me.

[github-actions]

This PR is stale because it has been open 365 days with no activity.