Merge pull request #44 from PrincetonUniversity/devel

Devel

.clang-format

@@ -0,0 +1,46 @@
+---
+# BasedOnStyle:  LLVM
+AccessModifierOffset: -2
+ConstructorInitializerIndentWidth: 4
+AlignEscapedNewlinesLeft: false
+AlignTrailingComments: true
+AllowAllParametersOfDeclarationOnNextLine: true
+AllowShortIfStatementsOnASingleLine: false
+AllowShortLoopsOnASingleLine: false
+AlwaysBreakTemplateDeclarations: false
+AlwaysBreakBeforeMultilineStrings: false
+BreakBeforeBinaryOperators: false
+BreakBeforeTernaryOperators: true
+BreakConstructorInitializersBeforeComma: false
+BinPackParameters: true
+ColumnLimit:     80
+ConstructorInitializerAllOnOneLineOrOnePerLine: false
+DerivePointerBinding: false
+ExperimentalAutoDetectBinPacking: false
+IndentCaseLabels: false
+MaxEmptyLinesToKeep: 1
+NamespaceIndentation: None
+ObjCSpaceBeforeProtocolList: true
+PenaltyBreakBeforeFirstCallParameter: 19
+PenaltyBreakComment: 60
+PenaltyBreakString: 1000
+PenaltyBreakFirstLessLess: 120
+PenaltyExcessCharacter: 1000000
+PenaltyReturnTypeOnItsOwnLine: 60
+PointerBindsToType: false
+SpacesBeforeTrailingComments: 1
+Cpp11BracedListStyle: false
+Standard:        Cpp03
+IndentWidth:     2
+TabWidth:        8
+UseTab:          Never
+BreakBeforeBraces: Attach
+IndentFunctionDeclarationAfterType: false
+SpacesInParentheses: false
+SpacesInAngles:  false
+SpaceInEmptyParentheses: false
+SpacesInCStyleCastParentheses: false
+SpaceAfterControlStatementKeyword: true
+SpaceBeforeAssignmentOperators: true
+ContinuationIndentWidth: 4
+...

.github/workflows/compilation.yml

@@ -0,0 +1,52 @@
+name: Build
+
+on: [push, pull_request]
+
+jobs:
+  build-serial:
+    runs-on: ubuntu-latest
+    steps:
+      - name: Check GNU and Cmake versions
+        run: gcc --version && cmake --version
+      - name: Checkout repository
+        uses: actions/checkout@v1
+      - name: Get submodules
+        run: git submodule init
+          &&  git submodule update
+      - name: Configure Serial build
+        run: cmake -S . -B build
+      - name: Build
+        run: cmake --build build
+  build-openmp:
+    runs-on: ubuntu-latest
+    steps:
+      - name: Check GNU and Cmake versions
+        run: gcc --version && cmake --version
+      - name: Checkout repository
+        uses: actions/checkout@v1
+      - name: Get submodules
+        run: git submodule init
+          &&  git submodule update
+      - name: Configure OpenMP build
+        run: cmake -S . -B build -DKokkos_ENABLE_OPENMP=ON
+      - name: Build
+        run: cmake --build build
+  build-ampere80:
+    runs-on: ubuntu-latest
+    steps:
+      - name: Check GNU and Cmake versions
+        run: gcc --version && cmake --version
+      - name: Install Cuda Toolkit
+        uses: Jimver/[email protected]
+        id: cuda-toolkit
+        with:
+          cuda: '11.7.0'
+      - name: Checkout repository
+        uses: actions/checkout@v1
+      - name: Get submodules
+        run: git submodule init
+          &&  git submodule update
+      - name: Configure OPENMP & CUDA build
+        run: cmake -S . -B build -DKokkos_ENABLE_OPENMP=ON -DKokkos_ENABLE_CUDA=ON -DKokkos_ARCH_AMPERE80=ON  -DKokkos_ENABLE_CUDA_LAMBDA=ON -DKokkos_ENABLE_CUDA_RELOCATABLE_DEVICE_CODE=ON
+      - name: Build
+        run: cmake --build build

.github/workflows/docs.yml

@@ -3,7 +3,7 @@ name: Docs
 on:
   #push:
   #  branches-ignore:
-  #    - '**'  
+  #    - '**'
   push:
     branches: [ main ]
 
@@ -31,4 +31,4 @@ jobs:
       with:
         GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
         BRANCH: gh-pages # The branch the action should deploy to.
-        FOLDER: docs/_build/html # The folder the action should deploy.
+        FOLDER: docs/_build/html # The folder the action should deploy.

.github/workflows/unittests.yml

@@ -0,0 +1,22 @@
+name: Unittests
+
+on: [push, pull_request]
+
+jobs:
+  build-and-test:
+    runs-on: ubuntu-latest
+    steps:
+      - name: Check GNU and Cmake versions
+        run: gcc --version && cmake --version
+      - name: Checkout repository
+        uses: actions/checkout@v1
+      - name: Get submodules
+        run: git submodule init
+          &&  git submodule update
+      - name: Configure
+        run: cmake -S . -B build
+      - name: Build
+        run: cmake --build build
+      - name: Run all tests
+        run: cd build/tests/unittests
+          && ctest

.gitignore

@@ -2,7 +2,11 @@
 .DS_Store
 build/
 _build/
-_static/
 _templates/
 public/
-firebase*.yml
+firebase*.yml
+*.out
+debug.sh
+output.log
+run.sh
+results/

.gitmodules

@@ -0,0 +1,3 @@
+[submodule "boost-cmake"]
+	path = boost-cmake
+	url = https://github.com/Orphis/boost-cmake.git

.pre-commit-config.yaml

@@ -0,0 +1,17 @@
+repos:
+  - repo: https://github.com/pre-commit/pre-commit-hooks
+    rev: "v4.3.0"
+    hooks:
+      - id: check-case-conflict
+      - id: check-merge-conflict
+      - id: check-symlinks
+      - id: check-yaml
+      - id: end-of-file-fixer
+      - id: mixed-line-ending
+      - id: requirements-txt-fixer
+      - id: trailing-whitespace
+  - repo: https://github.com/pre-commit/mirrors-clang-format
+    rev: "v14.0.5"
+    hooks:
+      - id: clang-format
+        types_or: [c++]

.readthedocs.yml

@@ -0,0 +1,29 @@
+# .readthedocs.yaml
+# Read the Docs configuration file
+# See https://docs.readthedocs.io/en/stable/config-file/v2.html for details
+
+# Required
+version: 2
+
+# Set the version of Python and other tools you might need
+build:
+  os: ubuntu-22.04
+  tools:
+    python: "3.11"
+    # You can also specify other tool versions:
+    # nodejs: "19"
+    # rust: "1.64"
+    # golang: "1.19"
+
+# Build documentation in the docs/ directory with Sphinx
+sphinx:
+   configuration: docs/conf.py
+
+# If using Sphinx, optionally build your docs in additional formats such as PDF
+# formats:
+#    - pdf
+
+# Optionally declare the Python requirements required to build your docs
+python:
+   install:
+   - requirements: docs/requirements.txt