Galaxy Workflow Testing

This repository runs automated workflows tests against UMSA Galaxy.

Instructions

If Planemo test is called on a Galaxy workflow named ref-rnaseq.ga, then tests should be defined in ref-rnaseq-test.yml (Note: *-test.yml should be present in filename otherwise you will encounter No tests were executed - see Galaxy output for details).
Details about how to create workflow test(s) can be found at the official source of Planemo.

Bug reports and pull requests are welcome on GitHub at https://github.com/RECETOX/workflow-testing.

Name	Name	Last commit message	Last commit date
Latest commit hechth Merge pull request #36 from zargham-ahmad/update_msfinder_workflow Jun 6, 2024 50e8de2 · Jun 6, 2024 History 103 Commits
.github/workflows	.github/workflows	Create project_automation.yml	Jun 23, 2023
Example_pipeline	Example_pipeline	Clean up existing workflows - change example workflow to a working on…	Feb 8, 2023
GC_MS_pipeline	GC_MS_pipeline	update the name of test input	Feb 24, 2023
LC_MS_pipeline	LC_MS_pipeline	Change testtoolshed to toolshed	Feb 9, 2023
QCxMS	QCxMS	tools where updated	Jun 4, 2024
QSAR-ready_SMILES_pipeline	QSAR-ready_SMILES_pipeline	Change testtoolshed to toolshed	Feb 9, 2023
apLCMS-hybrid	apLCMS-hybrid	Update hybrid tests and expected files	Jul 19, 2023
apLCMS-unsupervised	apLCMS-unsupervised	Update unsupervised tests and expected files	Jul 19, 2023
docs/images	docs/images	Added documentation of QSAR workflow	Sep 6, 2021
gc-training-material	gc-training-material	export workflow from UMSA	Jun 28, 2022
msfinder_workflow	msfinder_workflow	updated msfinder golm workflow	Jun 6, 2024
.gitignore	.gitignore	change main branch name in workflow.	Oct 16, 2020
LICENSE	LICENSE	Initial commit	Oct 16, 2020
README.md	README.md	Update readme	Feb 8, 2023