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@Royal-Botanic-Gardens-Victoria

Royal Botanic Gardens Victoria

Github Repos for the Royal Botanic Gardens Victoria Bioinformatics department.

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  1. VicMicrobiome VicMicrobiome Public

    Soil meta-barcoding across the state of Victoria, Australia

    HTML 2 1

  2. PAFTOL-taxonomy-classifier PAFTOL-taxonomy-classifier Public

    #Scripts to create Kraken2 database of PAFTOL V2.0 Angio353 genes. An excellent database for taxonomic identification of plants. #https://treeoflife.kew.org/ #https://github.com/DerrickWood/kraken2…

    Python 1

  3. DNA_entropy_scripts DNA_entropy_scripts Public

    Python scripts for calculating and filtering DNA entropy

    Python

  4. turbo_scripts turbo_scripts Public

    Parallelises common commands

    Python

  5. species2taxid.py species2taxid.py Public

    Fetches the NCBI TaxID and full taxonomy from list of species names.

    Python

  6. gap-download gap-download Public

    Downloads files from the GAP data portal https://data.bioplatforms.com/organization/about/bpa-plants

    Python

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