Set proper plot scales for ancillary plots #3289

Workflow file for this run

	name: CI

	on:
	[push, pull_request, workflow_call]

	defaults:
	run:
	shell: bash

	env:
	RELEASE: ${{ github.event_name == 'push' && contains(github.ref, 'refs/tags/test-v') }}
	# The test-installer job can use an old existing image rather than the most
	# recently built image; the 'needs' can be commented out to allow the
	# test-installer job to run independently (and therefore faster)
	INSTALLER_USE_OLD_IMAGE: false
	INSTALLER_OLD_RUNID: 3204825457
	# The test-installer job can run with the pyinstaller debug bundle
	INSTALLER_USE_DEBUG: false

	jobs:
	matrix:
	name: Generate test matrix

	#if: false # uncomment to prevent the rest of the workflow running

	runs-on: ubuntu-latest

	# Stop existing workflows for matching branches and pull requests
	concurrency:
	group: ${{ github.workflow }}-${{ github.event.pull_request.number \|\| github.ref }}
	cancel-in-progress: true

	outputs:
	matrix-json: ${{ steps.set-matrix.outputs.matrix }}

	steps:
	- name: Set up Python
	uses: actions/setup-python@v5
	with:
	python-version: 3.11

	- uses: actions/checkout@v4
	- id: set-matrix
	run: python .github/workflows/matrix.py >> $GITHUB_OUTPUT

	build-matrix:
	needs: [matrix]

	strategy:
	fail-fast: false
	matrix:
	include: ${{ fromJson(needs.matrix.outputs.matrix-json) }}

	name: "${{ matrix.job_name }}"

	runs-on: ${{ matrix.os }}

	steps:
	- name: Configuration of this job
	run: \|
	echo '${{ toJson(matrix) }}'

	- name: Obtain SasView source from git
	uses: actions/checkout@v4

	- name: Set up Python
	uses: actions/setup-python@v5
	with:
	python-version: ${{ matrix.python-version }}
	cache: 'pip'
	cache-dependency-path: \|
	**/ci.yml
	*/requirements.txt

	### Installation of build-dependencies

	- name: Install X11 libraries (Linux)
	if: ${{ startsWith(matrix.os, 'ubuntu') }}
	run: \|
	sudo apt install libxkbcommon-x11-0 libxcb-icccm4 libxcb-image0 libxcb-keysyms1 libxcb-randr0 libxcb-render-util0 libxcb-xinerama0 libxcb-xfixes0 x11-utils xvfb libegl-dev

	- name: Install Python dependencies
	run: \|
	python -m pip install --upgrade pip
	python -m pip install wheel setuptools
	python -m pip install -r build_tools/requirements.txt

	- name: Install pywin32 (Windows)
	if: ${{ startsWith(matrix.os, 'windows') }}
	run: \|
	python -m pip install pywin32

	- name: Install pyopencl (Windows)
	if: ${{ startsWith(matrix.os, 'windows') }}
	run: \|
	python -m pip install pytools mako cffi
	choco install opencl-intel-cpu-runtime
	choco install innosetup
	python -m pip install --only-binary=pyopencl --find-links http://www.silx.org/pub/wheelhouse/ --trusted-host www.silx.org pyopencl

	- name: Install pyopencl (Linux + macOS)
	if: ${{ !startsWith(matrix.os, 'windows') }}
	run: \|
	python -m pip install pyopencl

	- name: Fetch sources for sibling projects
	run: \|
	git clone --depth=50 --branch=v0.9.0 https://github.com/SasView/sasdata.git ../sasdata
	git clone --depth=50 --branch=v1.0.8 https://github.com/SasView/sasmodels.git ../sasmodels
	git clone --depth=50 --branch=v0.9.2 https://github.com/bumps/bumps.git ../bumps

	- name: Build and install sasdata
	run: \|
	cd ../sasdata
	rm -rf build
	rm -rf dist
	python setup.py clean
	python setup.py build
	mv build/lib/sasdata/example_data/* ../sasview/src/sas/example_data/
	python -m pip install --no-deps .

	- name: Build and install sasmodels
	run: \|
	cd ../sasmodels
	rm -rf build
	rm -rf dist
	python setup.py clean
	python setup.py build
	python -m pip install --no-deps .

	- name: Build and install bumps
	run: \|
	cd ../bumps
	rm -rf build
	rm -rf dist
	python setup.py clean
	python setup.py build
	python -m pip install --no-deps .

	### Document the build environment

	- name: Python package version list
	run: \|
	python -m pip freeze

	### Actual building of sasview

	- name: Build sasview
	run: \|
	# SET SASVIEW GITHASH
	githash=$( git rev-parse HEAD )
	sed -i.bak s/GIT_COMMIT/$githash/g src/sas/sasview/__init__.py
	# BUILD SASVIEW
	python setup.py clean
	python setup.py build
	python -m pip install --no-deps .

	### Run tests (if enabled)

	- name: Test with pytest
	if: ${{ matrix.tests }}
	env:
	PYOPENCL_COMPILER_OUTPUT: 1
	run: \|
	python -m pytest -v -s test

	# - name: Test GUI (Linux)
	# if: ${{ matrix.tests && matrix.os == 'ubuntu-latest' }}
	# env:
	# PYOPENCL_COMPILER_OUTPUT: 1
	# run: \|
	# # Suppress SIGSEGV from the tests until they can be fixed
	# retval=0
	# xvfb-run -a --server-args="-screen 0 1600x900x24" python -m pytest -rsx -v src/sas/qtgui/ \|\| retval=$?
	# if [ $retval -eq 139 ]; then echo "WARNING: Python interpreter exited with Segmentation Fault. This normally indicates that Qt objects were not correctly deleted. This error is currently suppressed in SasView's test suite."; retval=0; fi
	# exit $retval

	### Build documentation (if enabled)

	- name: Build sasmodels, sasdata, and bumps docs
	if: ${{ matrix.docs }}
	run: \|
	make -C ../bumps/doc html \|\| true
	mkdir -p ~/.sasmodels/compiled_models
	make -j4 -C ../sasmodels/doc html \|\| true
	make -C ../sasdata/docs html \|\| true

	- name: Build sasview docs
	if: ${{ matrix.docs }}
	run: \|
	mkdir -p build/lib
	cd docs/sphinx-docs/
	python build_sphinx.py \|\| true

	### Build the installer (if enabled)

	- name: Install utilities to build installer
	run: \|
	python -m pip install pyinstaller

	- name: Build sasview with pyinstaller
	if: ${{ matrix.installer }}
	run: \|
	cd installers
	rm -rf build/ dist/
	mkdir -p dist
	pyinstaller sasview.spec
	cd dist
	# the following builds a symlink farm in the package; it should
	# not be necessary, but without it, there will be lots of errors
	# about .so not found under linux.
	command -v ldconfig >/dev/null 2>&1 && ldconfig -n sasview
	tar zcf sasview-pyinstaller-dist.tar.gz sasview

	- name: Build sasview installer with INNO (Windows)
	if: ${{ matrix.installer && startsWith(matrix.os, 'windows') }}
	run: \|
	iscc installers/installer.iss
	mv installers/Output/setupSasView.exe installers/dist

	- name: Build sasview installer dmg file (OSX)
	if: ${{ matrix.installer && startsWith(matrix.os, 'macos') }}
	run: \|
	cd installers/dist
	hdiutil create SasView6.dmg -srcfolder SasView6.app -ov -format UDZO

	- name: Build sasview installer tarball (Linux)
	if: ${{ matrix.installer && startsWith(matrix.os, 'ubuntu') }}
	run: \|
	cd installers/dist
	tar zcf sasview6.tar.gz sasview

	- name: Collect a debug tarball of the installer package
	if: ${{ matrix.installer }}
	uses: actions/upload-artifact@v4
	with:
	name: Debug-SasView-Installer-${{ matrix.os }}-${{ matrix.python-version }}
	path: \|
	installers/dist/sasview-pyinstaller-dist.tar.gz
	if-no-files-found: ignore

	- name: Sign executable and create dmg (OSX)
	if: ${{ matrix.installer && startsWith(matrix.os, 'macos') }}
	env:
	MACOS_CERTIFICATE: ${{ secrets.MACOS_CERTIFICATE_ISA }}
	MACOS_CERTIFICATE_PWD: ${{ secrets.MACOS_CERTIFICATE_ISA_PWD }}
	run: \|
	echo $MACOS_CERTIFICATE \| base64 --decode > certificate.p12
	security create-keychain -p DloaAcYP build.keychain
	security default-keychain -s build.keychain
	security unlock-keychain -p DloaAcYP build.keychain
	security import certificate.p12 -k build.keychain -P $MACOS_CERTIFICATE_PWD -T /usr/bin/codesign
	security set-key-partition-list -S apple-tool:,apple:,codesign: -s -k DloaAcYP build.keychain
	security find-identity -p codesigning

	cd installers/dist
	python ../../build_tools/fix_qt_folder_names_for_codesign.py SasView6.app
	python ../../build_tools/code_sign_osx.py
	codesign --verify --options=runtime --entitlements ../../build_tools/entitlements.plist --timestamp --deep --verbose=4 --force --sign "Developer ID Application: The International Scattering Alliance (8CX8K63BQM)" SasView6.app
	hdiutil create SasView6.dmg -srcfolder SasView6.app -ov -format UDZO
	codesign -s "Developer ID Application: The International Scattering Alliance (8CX8K63BQM)" SasView6.dmg

	- name: Notarize Release Build (OSX)
	if: ${{ matrix.installer && startsWith(matrix.os, 'macos') }}
	uses: lando/notarize-action@v2
	with:
	product-path: "installers/dist/SasView6.dmg"
	primary-bundle-id: "org.sasview.SasView6"
	appstore-connect-username: ${{ secrets.NOTARIZATION_USERNAME }}
	appstore-connect-password: ${{ secrets.NOTARIZATION_PASSWORD }}
	appstore-connect-team-id: W2AG9MPZ43
	verbose: True

	- name: Staple Release Build (OSX)
	if: ${{ matrix.installer && startsWith(matrix.os, 'macos') }}
	uses: BoundfoxStudios/action-xcode-staple@v1
	with:
	product-path: "installers/dist/SasView6.dmg"

	- name: Sign binary
	if: ${{ matrix.installer && startsWith(matrix.os, 'windows') }}
	uses: lando/code-sign-action@v2
	with:
	file: installers/dist/setupSasView.exe
	certificate-data: ${{ secrets.WINDOZE_CERT_DATA }}
	certificate-password: ${{ secrets.WINDOZE_CERT_PASSWORD }}
	keylocker-host: ${{ secrets.KEYLOCKER_HOST }}
	keylocker-api-key: ${{ secrets.KEYLOCKER_API_KEY }}
	keylocker-cert-sha1-hash: ${{ secrets.KEYLOCKER_CERT_SHA1_HASH }}

	- name: Publish installer package
	if: ${{ matrix.installer }}
	uses: actions/upload-artifact@v4
	with:
	name: SasView-Installer-${{ matrix.os }}-${{ matrix.python-version }}
	path: \|
	installers/dist/setupSasView.exe
	installers/dist/SasView6.dmg
	installers/dist/sasview6.tar.gz
	if-no-files-found: ignore


	test-installer:
	needs: [ build-matrix ]

	strategy:
	matrix:
	os: [ windows-latest, ubuntu-20.04 ]
	python-version: [ 3.11 ]
	fail-fast: false

	name: Test installer

	runs-on: ${{ matrix.os }}

	steps:
	- name: Set variables (Windows)
	if: ${{ startsWith(matrix.os, 'windows') }}
	run: \|
	echo "INSTALL_PATH=$PWD/sasview/" >> $GITHUB_ENV
	echo "RUN_SASVIEW=$PWD/sasview/sasview.exe" >> $GITHUB_ENV

	- name: Set variables (Linux)
	if: ${{ startsWith(matrix.os, 'ubuntu') }}
	run: \|
	echo "INSTALL_PATH=$PWD/sasview/" >> $GITHUB_ENV
	echo "RUN_SASVIEW=$PWD/sasview/sasview" >> $GITHUB_ENV

	- name: Set variables (Windows Powershell)
	if: ${{ startsWith(matrix.os, 'windows') }}
	shell: powershell
	# unfortunately we end up tripping over ourselves with paths
	# later on and need a PS version of the install path
	run: \|
	"INSTALL_WIN_PATH=$(Get-Location)/sasview/" >> $env:GITHUB_ENV

	### Obtain the installer, either from the previous step
	### or from a previous run of the workflow

	- name: Retrieve installer (workflow image)
	if: ${{ env.INSTALLER_USE_OLD_IMAGE != 'true' }}
	uses: actions/download-artifact@v4
	id: download
	with:
	name: SasView-Installer-${{ matrix.os }}-${{ matrix.python-version }}

	- name: Set variables for download (workflow image)
	if: ${{ env.INSTALLER_USE_OLD_IMAGE != 'true' }}
	run: \|
	echo "DL_PATH=${{steps.download.outputs.download-path}}" >> $GITHUB_ENV

	- name: Set variables for download (workflow image) (Windows)
	if: ${{ env.INSTALLER_USE_OLD_IMAGE != 'true' && startsWith(matrix.os, 'windows') }}
	shell: powershell
	run: \|
	"DL_WIN_PATH=${{steps.download.outputs.download-path}}" >> $env:GITHUB_ENV

	- name: Retrieve installer (old image)
	if: ${{ env.INSTALLER_USE_OLD_IMAGE == 'true' }}
	id: download-old-installer
	uses: dawidd6/action-download-artifact@v2
	with:
	# Select a specific installer image based on the GitHub Actions run id
	run_id: ${{ env.INSTALLER_OLD_RUNID }}
	name: SasView-Installer-${{ matrix.os }}-${{ matrix.python-version }}
	path: downloads
	if_no_artifact_found: fail

	- name: Set variables for download (old image)
	if: ${{ env.INSTALLER_USE_OLD_IMAGE == 'true' }}
	run: \|
	echo "DL_PATH=$PWD/downloads" >> $GITHUB_ENV

	- name: Set variables for download (old image) (Windows)
	if: ${{ env.INSTALLER_USE_OLD_IMAGE == 'true' && startsWith(matrix.os, 'windows') }}
	shell: powershell
	run: \|
	"DL_WIN_PATH=$(Get-Location)/downloads" >> $env:GITHUB_ENV

	- name: Check downloads
	run: \|
	echo "Sasview downloaded to: $DL_PATH"
	find "$DL_PATH"

	### Run the installer and check that the installation looks OK

	- name: Run installer (Windows)
	if: ${{ startsWith(matrix.os, 'windows') }}
	# The installer spawns a new process and exits immediately, meaning
	# that the shell thinks it has finishes, tries to exit to move onto
	# the next step in the job, and kills the child process that is
	# trying to do the installation.
	# Wrapping the installer in "Start-Process ... -Wait" means that
	# this step doesn't exit until the installer has finished.
	shell: powershell
	run: \|
	Start-Process -FilePath "${{ env.DL_WIN_PATH }}/setupSasView.exe" -ArgumentList "/SP- /VERYSILENT /SUPPRESSMSGBOXES /NORESTART /ALLUSERS /SKIPLICENSE=true /LANG=english /NOICONS /TASKS='' /LOG=${{ env.DL_WIN_PATH }}/install.log /DIR=${{ env.INSTALL_WIN_PATH }}" -Wait

	- name: Check installation log (Windows)
	if: ${{ startsWith(matrix.os, 'windows') }}
	run: \|
	echo "Contents of installation log '$DL_PATH/install.log':"
	cat $DL_PATH/install.log

	- name: Run installer (Linux)
	if: ${{ startsWith(matrix.os, 'ubuntu') }}
	run: \|
	# $INSTALL_PATH is already the base directory
	tar xf "$DL_PATH/sasview6.tar.gz"

	- name: Check installation files
	run: \|
	echo "File listing of SasView installed in '$INSTALL_PATH'"
	find "$INSTALL_PATH"

	- name: Try running the installation (Windows)
	if: ${{ startsWith(matrix.os, 'windows') }}
	# If sasview has crashed on its own, then this should return an error
	run: \|
	$RUN_SASVIEW &
	sleep 60s
	kill %1

	- name: Install X11 libraries (Linux)
	if: ${{ startsWith(matrix.os, 'ubuntu') }}
	env:
	DEBIAN_FRONTEND: noninteractive
	run: \|
	sudo apt install libegl1 libopengl0 libxkbcommon-x11-0 libxcb-icccm4 libxcb-image0 libxcb-keysyms1 libxcb-randr0 libxcb-render-util0 libxcb-xinerama0 libxcb-xfixes0 x11-utils xvfb

	- name: Try running the installation (Linux)
	if: ${{ startsWith(matrix.os, 'ubuntu' )}}
	# If sasview has crashed on its own, then this should return an error
	run: \|
	(
	echo "## START SASVIEW"
	xvfb-run -a --server-args="-screen 0 1024x768x24" $RUN_SASVIEW 2>&1 \|
	tee sasview-test.log
	) &
	svpid=$!
	(
	set -e
	sleep 20s
	echo "## PULSE CHECK"
	kill -0 $svpid
	echo "## PULSE OK"
	sleep 40s
	echo "## FINISHING SMOKE TEST"
	kill $svpid
	echo "## SMOKE TEST COMPLETE"
	exit 0
	) &
	pulsepid=$1
	wait $pulsepid
	# Check the log file for successful startup
	grep "SasView session started" sasview-test.log

	### Optionally attempt to work with the debug tarball from pyinstaller

	- name: Retrieve installer debug tarball
	if: ${{ env.INSTALLER_USE_DEBUG == 'true' }}
	id: download-old-debug
	uses: dawidd6/action-download-artifact@v2
	with:
	# Select a specific installer image based on the GitHub Actions run id
	run_id: ${{ env.INSTALLER_OLD_RUNID }}
	name: Debug-SasView-Installer-${{ matrix.os }}-${{ matrix.python-version }}
	path: downloads
	if_no_artifact_found: fail

	- name: Extract debug tarball
	if: ${{ env.INSTALLER_USE_DEBUG == 'true' }}
	run: \|
	mkdir unpack
	cd unpack
	tar zxf ../downloads/sasview-pyinstaller-dist.tar.gz

	- name: Check debug installation files
	if: ${{ env.INSTALLER_USE_DEBUG == 'true' && startsWith(matrix.os, 'windows') }}
	run: \|
	echo "File listing of SasView install bundle unpacked in 'unpack'"
	find unpack

	- name: Try running debug unpack
	if: ${{ env.INSTALLER_USE_DEBUG == 'true' && startsWith(matrix.os, 'windows') }}
	run: \|
	cd unpack/sasview
	./sasview.exe

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Set proper plot scales for ancillary plots #3289

Workflow file

Set proper plot scales for ancillary plots #3289

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Workflow file for this run