379 implement ide model with age resolution #5641
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| name: CI | |
| on: | |
| schedule: | |
| - cron: "40 2 * * *" | |
| push: | |
| branches: | |
| - "main" | |
| tags: | |
| - version-* | |
| paths-ignore: | |
| - "**/memilio-epidata/**" | |
| pull_request: | |
| types: [opened, reopened, synchronize, ready_for_review] | |
| paths-ignore: | |
| - "**/memilio-epidata/**" | |
| workflow_dispatch: | |
| jobs: | |
| pre-commit: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: 3.11 | |
| - uses: pre-commit/[email protected] | |
| build-cpp-gcc_clang: | |
| if: github.event.pull_request.draft == false | |
| strategy: | |
| matrix: | |
| compiler: ["gcc", "clang"] | |
| config: ["Debug", "Release"] | |
| version: ["latest", "min"] | |
| include: | |
| - version: "latest" | |
| os: "ubuntu-latest" | |
| - version: "min" | |
| os: "ubuntu-20.04" | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: ./.github/actions/linux-build | |
| with: | |
| compiler: ${{ matrix.compiler }} | |
| config: ${{ matrix.config }} | |
| version: ${{ matrix.version }} | |
| coverage: ${{ (matrix.compiler == 'gcc' && matrix.config == 'Debug' && matrix.version == 'latest') && 'ON' || 'OFF' }} # `c && t || f` is (usually) equivalent to `c ? t : f` | |
| sanitizers: ${{ (matrix.compiler == 'gcc' && matrix.config == 'Debug' && matrix.version == 'latest') && 'ON' || 'OFF' }} | |
| build-cpp-gcc-no-optional-deps: | |
| if: github.event.pull_request.draft == false | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: ./.github/actions/linux-build | |
| with: | |
| compiler: gcc | |
| version: latest | |
| config: Release | |
| optional-dependencies: OFF | |
| build-cpp-gcc-openmp: | |
| if: github.event.pull_request.draft == false | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: ./.github/actions/linux-build | |
| with: | |
| compiler: gcc | |
| version: latest | |
| config: Release | |
| openmp: ON | |
| build-cpp-msvc: | |
| if: github.event.pull_request.draft == false | |
| strategy: | |
| matrix: | |
| config: ["Debug", "Release"] | |
| version: ["latest", "min"] | |
| include: | |
| - version: "latest" | |
| os: "windows-2022" | |
| - version: "min" | |
| os: "windows-2019" | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: ./.github/actions/windows-build | |
| with: | |
| config: ${{ matrix.config }} | |
| version: ${{ matrix.version }} | |
| build-cpp-msvc-no-optional-deps: | |
| if: github.event.pull_request.draft == false | |
| runs-on: windows-2022 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: ./.github/actions/windows-build | |
| with: | |
| config: Release | |
| version: latest | |
| optional-dependencies: OFF | |
| test-cpp-gcc_clang: | |
| if: github.event.pull_request.draft == false | |
| needs: build-cpp-gcc_clang | |
| strategy: | |
| matrix: | |
| compiler: ["gcc", "clang"] | |
| config: ["Debug", "Release"] | |
| version: ["latest", "min"] | |
| include: | |
| - version: "latest" | |
| os: "ubuntu-latest" | |
| - version: "min" | |
| os: "ubuntu-20.04" | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: ./.github/actions/linux-test | |
| with: | |
| artifact-pattern: ${{ matrix.compiler }}-${{ matrix.version }}-${{ matrix.config }} | |
| coverage: ${{ (matrix.compiler == 'gcc' && matrix.version == 'latest' && matrix.config == 'Debug') && 'ON' || 'OFF' }} | |
| merge-test-artifacts: | |
| needs: [test-cpp-gcc_clang, test-cpp-msvc, test-py-surrogatemodel] | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: merge-coverage-artifacts | |
| uses: actions/upload-artifact/merge@v4 | |
| with: | |
| name: test-cpp-coverage-reports | |
| pattern: test-cpp-coverage-reports-* | |
| - name: merge-linux-artifacts | |
| uses: actions/upload-artifact/merge@v4 | |
| with: | |
| name: test-cpp-linux-report | |
| pattern: test-cpp-linux-report-* | |
| - name: merge-windows-artifacts | |
| uses: actions/upload-artifact/merge@v4 | |
| with: | |
| name: test-cpp-win-report | |
| pattern: test-cpp-win-report-* | |
| - name: merge python reports | |
| uses: actions/upload-artifact/merge@v4 | |
| with: | |
| name: test-py-coverage-reports-surrogatemodel | |
| pattern: test-py-coverage-reports-surrogatemodel-* | |
| test-cpp-gcc-no-optional-deps: | |
| if: github.event.pull_request.draft == false | |
| needs: build-cpp-gcc-no-optional-deps | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: ./.github/actions/linux-test | |
| with: | |
| artifact-pattern: gcc-latest-Release | |
| optional-deps: OFF | |
| test-cpp-gcc-openmp: | |
| if: github.event.pull_request.draft == false | |
| needs: build-cpp-gcc-openmp | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 30 | |
| env: | |
| OMP_NUM_THREADS: 4 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: ./.github/actions/linux-test | |
| with: | |
| artifact-pattern: gcc-latest-Release | |
| num-repeat: 10 | |
| openmp: ON | |
| test-cpp-msvc: | |
| if: github.event.pull_request.draft == false | |
| needs: build-cpp-msvc | |
| strategy: | |
| matrix: | |
| config: ["Debug", "Release"] | |
| version: ["latest", "min"] | |
| include: | |
| - version: "latest" | |
| os: "windows-2022" | |
| - version: "min" | |
| os: "windows-2019" | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: ./.github/actions/windows-test | |
| with: | |
| artifact-pattern: msvc-${{ matrix.version }}-${{ matrix.config }} | |
| test-cpp-msvc-no-optional-deps: | |
| if: github.event.pull_request.draft == false | |
| needs: build-cpp-msvc-no-optional-deps | |
| runs-on: windows-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: ./.github/actions/windows-test | |
| with: | |
| artifact-pattern: msvc-latest-Release | |
| optional-deps: OFF | |
| run_examples-cpp-gcc_clang: | |
| if: github.event.pull_request.draft == false | |
| needs: build-cpp-gcc_clang | |
| strategy: | |
| matrix: | |
| compiler: ["gcc", "clang"] | |
| config: ["Debug", "Release"] | |
| version: ["latest", "min"] | |
| include: | |
| - version: "latest" | |
| os: "ubuntu-latest" | |
| - version: "min" | |
| os: "ubuntu-20.04" | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: ./.github/actions/linux-run_examples | |
| with: | |
| build-artifact: build-cpp-linux-${{ matrix.compiler }}-${{ matrix.version }}-${{ matrix.config }} | |
| run_examples-cpp-msvc: | |
| if: github.event.pull_request.draft == false | |
| needs: build-cpp-msvc | |
| strategy: | |
| matrix: | |
| config: ["Debug", "Release"] | |
| version: ["latest", "min"] | |
| include: | |
| - version: "latest" | |
| os: "windows-2022" | |
| - version: "min" | |
| os: "windows-2019" | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: ./.github/actions/windows-run_examples | |
| with: | |
| build-artifact: build-cpp-windows-msvc-${{ matrix.version }}-${{ matrix.config }} | |
| build-py-generation: | |
| if: github.event.pull_request.draft == false | |
| runs-on: ubuntu-latest | |
| container: quay.io/pypa/manylinux_2_28_x86_64 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: ./.github/actions/build-py | |
| with: | |
| package: generation | |
| build-py-simulation: | |
| if: github.event.pull_request.draft == false | |
| runs-on: ubuntu-latest | |
| container: quay.io/pypa/manylinux_2_28_x86_64 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: ./.github/actions/build-py | |
| with: | |
| package: simulation | |
| build-py-surrogatemodel: | |
| if: github.event.pull_request.draft == false | |
| runs-on: ubuntu-latest | |
| container: quay.io/pypa/manylinux_2_28_x86_64 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: ./.github/actions/build-py | |
| with: | |
| package: surrogatemodel | |
| test-py-generation: | |
| if: github.event.pull_request.draft == false | |
| strategy: | |
| matrix: | |
| version: ["3.8", "3.11"] | |
| needs: build-py-generation | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: ./.github/actions/test-py | |
| with: | |
| package: generation | |
| test-py-simulation: | |
| if: github.event.pull_request.draft == false | |
| needs: build-py-simulation | |
| strategy: | |
| matrix: | |
| version: ["3.8", "3.11"] | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: ./.github/actions/test-py | |
| with: | |
| package: simulation | |
| test-py-surrogatemodel: | |
| if: github.event.pull_request.draft == false | |
| needs: [build-py-surrogatemodel, build-py-simulation] | |
| strategy: | |
| matrix: | |
| version: ["3.8", "3.11"] | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: ./.github/actions/test-py | |
| with: | |
| version: ${{ matrix.version }} | |
| package: surrogatemodel | |
| coverage: ON | |
| test-docs: | |
| if: github.event.pull_request.draft == false | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: ./.github/actions/test-docs | |
| codecov: | |
| if: github.event.pull_request.draft == false | |
| needs: merge-test-artifacts | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Install dependencies | |
| run: | | |
| sudo apt-get -qq update | |
| sudo apt-get -qq -y install git curl | |
| - name: Download python coverage report | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: test-py-coverage-reports-surrogatemodel | |
| - name: Download cpp coverage report | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: test-cpp-coverage-reports | |
| - name: Deploy to codecov.io | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| directory: ./coverage_python | |
| files: ./coverage_python/**,./coverage.info | |
| verbose: true | |
| pages: | |
| if: github.event.pull_request.draft == false | |
| permissions: | |
| contents: write | |
| needs: [test-docs, merge-test-artifacts] | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Install dependencies | |
| run: | | |
| sudo apt-get -qq update | |
| sudo apt-get -qq -y install git | |
| - name: Download python coverage report | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: test-py-coverage-reports-surrogatemodel | |
| - name: Download cpp coverage report | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: test-cpp-coverage-reports | |
| - name: Download pylint report | |
| #if an error occurs here, the pylint report was not built, probably manually trigger epidata-ci | |
| uses: dawidd6/action-download-artifact@v2 | |
| with: | |
| github_token: ${{secrets.GITHUB_TOKEN}} | |
| workflow: epidata_main.yml | |
| name: pylint-report-epidata | |
| path: pycode/build_pylint | |
| - name: Download documentation | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: documentation | |
| path: docs/html | |
| - name: Prepare basic Pages sites | |
| run: | | |
| mkdir -p public | |
| cp docs/style.css public/style.css | |
| cp docs/index.html public/index.html | |
| - name: Prepare pylint reports | |
| run: | | |
| mkdir -p public/pylint | |
| cp pycode/build_pylint/pylint.html public/pylint/index.html | |
| - name: Prepare documentation | |
| run: | | |
| mkdir -p public/documentation | |
| cp -r docs/html/* public/documentation | |
| - name: Prepare coverage reports | |
| run: | | |
| mkdir -p public/coverage | |
| mkdir -p public/coverage/cpp | |
| mkdir -p public/coverage/python | |
| cp -r coverage_python/* public/coverage/python/ | |
| cp -r coverage/* public/coverage/cpp/ | |
| - name: Upload pages as artifact | |
| uses: actions/upload-artifact@v4 | |
| if: github.event_name == 'pull_request' && github.ref != 'refs/heads/main' | |
| with: | |
| name: pages | |
| path: public | |
| if-no-files-found: error | |
| retention-days: 1 | |
| - name: Deploy to gh-pages branch | |
| uses: peaceiris/actions-gh-pages@v3 | |
| if: github.event_name == 'push' && github.ref == 'refs/heads/main' | |
| with: | |
| github_token: ${{ secrets.GITHUB_TOKEN }} | |
| publish_dir: ./public |