932 Get_default of Parameter HighViralLoadProtectionFactor doesn't work as expected #5654

Workflow file for this run

	name: CI


	on:
	schedule:
	- cron: "40 2 * * *"
	push:
	branches:
	- "main"
	tags:
	- version-*
	paths-ignore:
	- "/memilio-epidata/"
	pull_request:
	types: [opened, reopened, synchronize, ready_for_review]
	paths-ignore:
	- "/memilio-epidata/"
	workflow_dispatch:

	jobs:
	pre-commit:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v4
	- uses: actions/setup-python@v5
	with:
	python-version: 3.11
	- uses: pre-commit/[email protected]

	build-cpp-gcc_clang:
	if: github.event.pull_request.draft == false
	strategy:
	matrix:
	compiler: ["gcc", "clang"]
	config: ["Debug", "Release"]
	version: ["latest", "min"]
	include:
	- version: "latest"
	os: "ubuntu-latest"
	- version: "min"
	os: "ubuntu-20.04"
	runs-on: ${{ matrix.os }}
	steps:
	- uses: actions/checkout@v4
	- uses: ./.github/actions/linux-build
	with:
	compiler: ${{ matrix.compiler }}
	config: ${{ matrix.config }}
	version: ${{ matrix.version }}
	coverage: ${{ (matrix.compiler == 'gcc' && matrix.config == 'Debug' && matrix.version == 'latest') && 'ON' \|\| 'OFF' }} # `c && t \|\| f` is (usually) equivalent to `c ? t : f`
	sanitizers: ${{ (matrix.compiler == 'gcc' && matrix.config == 'Debug' && matrix.version == 'latest') && 'ON' \|\| 'OFF' }}

	build-cpp-gcc-no-optional-deps:
	if: github.event.pull_request.draft == false
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v4
	- uses: ./.github/actions/linux-build
	with:
	compiler: gcc
	version: latest
	config: Release
	optional-dependencies: OFF

	build-cpp-gcc-openmp:
	if: github.event.pull_request.draft == false
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v4
	- uses: ./.github/actions/linux-build
	with:
	compiler: gcc
	version: latest
	config: Release
	openmp: ON

	build-cpp-msvc:
	if: github.event.pull_request.draft == false
	strategy:
	matrix:
	config: ["Debug", "Release"]
	version: ["latest", "min"]
	include:
	- version: "latest"
	os: "windows-2022"
	- version: "min"
	os: "windows-2019"
	runs-on: ${{ matrix.os }}
	steps:
	- uses: actions/checkout@v4
	- uses: ./.github/actions/windows-build
	with:
	config: ${{ matrix.config }}
	version: ${{ matrix.version }}

	build-cpp-msvc-no-optional-deps:
	if: github.event.pull_request.draft == false
	runs-on: windows-2022
	steps:
	- uses: actions/checkout@v4
	- uses: ./.github/actions/windows-build
	with:
	config: Release
	version: latest
	optional-dependencies: OFF

	test-cpp-gcc_clang:
	if: github.event.pull_request.draft == false
	needs: build-cpp-gcc_clang
	strategy:
	matrix:
	compiler: ["gcc", "clang"]
	config: ["Debug", "Release"]
	version: ["latest", "min"]
	include:
	- version: "latest"
	os: "ubuntu-latest"
	- version: "min"
	os: "ubuntu-20.04"
	runs-on: ${{ matrix.os }}
	steps:
	- uses: actions/checkout@v4
	- uses: ./.github/actions/linux-test
	with:
	artifact-pattern: ${{ matrix.compiler }}-${{ matrix.version }}-${{ matrix.config }}
	coverage: ${{ (matrix.compiler == 'gcc' && matrix.version == 'latest' && matrix.config == 'Debug') && 'ON' \|\| 'OFF' }}

	merge-test-artifacts:
	needs: [test-cpp-gcc_clang, test-cpp-msvc, test-py-surrogatemodel]
	runs-on: ubuntu-latest
	steps:
	- name: merge-coverage-artifacts
	uses: actions/upload-artifact/merge@v4
	with:
	name: test-cpp-coverage-reports
	pattern: test-cpp-coverage-reports-*
	- name: merge-linux-artifacts
	uses: actions/upload-artifact/merge@v4
	with:
	name: test-cpp-linux-report
	pattern: test-cpp-linux-report-*
	- name: merge-windows-artifacts
	uses: actions/upload-artifact/merge@v4
	with:
	name: test-cpp-win-report
	pattern: test-cpp-win-report-*
	- name: merge python reports
	uses: actions/upload-artifact/merge@v4
	with:
	name: test-py-coverage-reports-surrogatemodel
	pattern: test-py-coverage-reports-surrogatemodel-*

	test-cpp-gcc-no-optional-deps:
	if: github.event.pull_request.draft == false
	needs: build-cpp-gcc-no-optional-deps
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v4
	- uses: ./.github/actions/linux-test
	with:
	artifact-pattern: gcc-latest-Release
	optional-deps: OFF

	test-cpp-gcc-openmp:
	if: github.event.pull_request.draft == false
	needs: build-cpp-gcc-openmp
	runs-on: ubuntu-latest
	timeout-minutes: 30
	env:
	OMP_NUM_THREADS: 4
	steps:
	- uses: actions/checkout@v4
	- uses: ./.github/actions/linux-test
	with:
	artifact-pattern: gcc-latest-Release
	num-repeat: 10
	openmp: ON

	test-cpp-msvc:
	if: github.event.pull_request.draft == false
	needs: build-cpp-msvc
	strategy:
	matrix:
	config: ["Debug", "Release"]
	version: ["latest", "min"]
	include:
	- version: "latest"
	os: "windows-2022"
	- version: "min"
	os: "windows-2019"
	runs-on: ${{ matrix.os }}
	steps:
	- uses: actions/checkout@v4
	- uses: ./.github/actions/windows-test
	with:
	artifact-pattern: msvc-${{ matrix.version }}-${{ matrix.config }}

	test-cpp-msvc-no-optional-deps:
	if: github.event.pull_request.draft == false
	needs: build-cpp-msvc-no-optional-deps
	runs-on: windows-latest
	steps:
	- uses: actions/checkout@v4
	- uses: ./.github/actions/windows-test
	with:
	artifact-pattern: msvc-latest-Release
	optional-deps: OFF

	run_examples-cpp-gcc_clang:
	if: github.event.pull_request.draft == false
	needs: build-cpp-gcc_clang
	strategy:
	matrix:
	compiler: ["gcc", "clang"]
	config: ["Debug", "Release"]
	version: ["latest", "min"]
	include:
	- version: "latest"
	os: "ubuntu-latest"
	- version: "min"
	os: "ubuntu-20.04"
	runs-on: ${{ matrix.os }}
	steps:
	- uses: actions/checkout@v4
	- uses: ./.github/actions/linux-run_examples
	with:
	build-artifact: build-cpp-linux-${{ matrix.compiler }}-${{ matrix.version }}-${{ matrix.config }}

	run_examples-cpp-msvc:
	if: github.event.pull_request.draft == false
	needs: build-cpp-msvc
	strategy:
	matrix:
	config: ["Debug", "Release"]
	version: ["latest", "min"]
	include:
	- version: "latest"
	os: "windows-2022"
	- version: "min"
	os: "windows-2019"
	runs-on: ${{ matrix.os }}
	steps:
	- uses: actions/checkout@v4
	- uses: ./.github/actions/windows-run_examples
	with:
	build-artifact: build-cpp-windows-msvc-${{ matrix.version }}-${{ matrix.config }}

	build-py-generation:
	if: github.event.pull_request.draft == false
	runs-on: ubuntu-latest
	container: quay.io/pypa/manylinux_2_28_x86_64
	steps:
	- uses: actions/checkout@v4
	- uses: ./.github/actions/build-py
	with:
	package: generation

	build-py-simulation:
	if: github.event.pull_request.draft == false
	runs-on: ubuntu-latest
	container: quay.io/pypa/manylinux_2_28_x86_64
	steps:
	- uses: actions/checkout@v4
	- uses: ./.github/actions/build-py
	with:
	package: simulation

	build-py-surrogatemodel:
	if: github.event.pull_request.draft == false
	runs-on: ubuntu-latest
	container: quay.io/pypa/manylinux_2_28_x86_64
	steps:
	- uses: actions/checkout@v4
	- uses: ./.github/actions/build-py
	with:
	package: surrogatemodel

	test-py-generation:
	if: github.event.pull_request.draft == false
	strategy:
	matrix:
	version: ["3.8", "3.11"]
	needs: build-py-generation
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v4
	- uses: ./.github/actions/test-py
	with:
	package: generation

	test-py-simulation:
	if: github.event.pull_request.draft == false
	needs: build-py-simulation
	strategy:
	matrix:
	version: ["3.8", "3.11"]
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v4
	- uses: ./.github/actions/test-py
	with:
	package: simulation

	test-py-surrogatemodel:
	if: github.event.pull_request.draft == false
	needs: [build-py-surrogatemodel, build-py-simulation]
	strategy:
	matrix:
	version: ["3.8", "3.11"]
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v4
	- uses: ./.github/actions/test-py
	with:
	version: ${{ matrix.version }}
	package: surrogatemodel
	coverage: ON

	test-docs:
	if: github.event.pull_request.draft == false
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v4
	- uses: ./.github/actions/test-docs

	codecov:
	if: github.event.pull_request.draft == false
	needs: merge-test-artifacts
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v4
	- name: Install dependencies
	run: \|
	sudo apt-get -qq update
	sudo apt-get -qq -y install git curl
	- name: Download python coverage report
	uses: actions/download-artifact@v4
	with:
	name: test-py-coverage-reports-surrogatemodel
	- name: Download cpp coverage report
	uses: actions/download-artifact@v4
	with:
	name: test-cpp-coverage-reports
	- name: Deploy to codecov.io
	uses: codecov/codecov-action@v3
	with:
	token: ${{ secrets.CODECOV_TOKEN }}
	directory: ./coverage_python
	files: ./coverage_python/**,./coverage.info
	verbose: true

	pages:
	if: github.event.pull_request.draft == false
	permissions:
	contents: write
	needs: [test-docs, merge-test-artifacts]
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v4
	- name: Install dependencies
	run: \|
	sudo apt-get -qq update
	sudo apt-get -qq -y install git
	- name: Download python coverage report
	uses: actions/download-artifact@v4
	with:
	name: test-py-coverage-reports-surrogatemodel
	- name: Download cpp coverage report
	uses: actions/download-artifact@v4
	with:
	name: test-cpp-coverage-reports
	- name: Download pylint report
	#if an error occurs here, the pylint report was not built, probably manually trigger epidata-ci
	uses: dawidd6/action-download-artifact@v2
	with:
	github_token: ${{secrets.GITHUB_TOKEN}}
	workflow: epidata_main.yml
	name: pylint-report-epidata
	path: pycode/build_pylint
	- name: Download documentation
	uses: actions/download-artifact@v4
	with:
	name: documentation
	path: docs/html
	- name: Prepare basic Pages sites
	run: \|
	mkdir -p public
	cp docs/style.css public/style.css
	cp docs/index.html public/index.html
	- name: Prepare pylint reports
	run: \|
	mkdir -p public/pylint
	cp pycode/build_pylint/pylint.html public/pylint/index.html
	- name: Prepare documentation
	run: \|
	mkdir -p public/documentation
	cp -r docs/html/* public/documentation
	- name: Prepare coverage reports
	run: \|
	mkdir -p public/coverage
	mkdir -p public/coverage/cpp
	mkdir -p public/coverage/python
	cp -r coverage_python/* public/coverage/python/
	cp -r coverage/* public/coverage/cpp/
	- name: Upload pages as artifact
	uses: actions/upload-artifact@v4
	if: github.event_name == 'pull_request' && github.ref != 'refs/heads/main'
	with:
	name: pages
	path: public
	if-no-files-found: error
	retention-days: 1
	- name: Deploy to gh-pages branch
	uses: peaceiris/actions-gh-pages@v3
	if: github.event_name == 'push' && github.ref == 'refs/heads/main'
	with:
	github_token: ${{ secrets.GITHUB_TOKEN }}
	publish_dir: ./public

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932 Get_default of Parameter HighViralLoadProtectionFactor doesn't work as expected #5654

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932 Get_default of Parameter HighViralLoadProtectionFactor doesn't work as expected #5654

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