v1.2.1

Added features / functionality:

• Implementation of stochastic two variant SEIR models
• Added delay in testing and planned mobility in ABM
• ScoreP performance profile of ABM
• gperftools profiler
• New initialization method from flows for LCT model
• Stub generation for python bindings

General changes:

• Refactored ABM code: Rename EPI to MIO, migration to mobility, and World to Model
• Replaced pointers in ABM by new structure
• Make the LCT secir model a derived class of CompartmentalModel
• New parameters that describe the multiplicative factor used for the TestAndTraceCapacity
• Extended test for equilibrium of IDE model
• Change return type of check_constraints function in the populations class to bool
• Adapt parameters_io of IDE SECIR model
• Small refacturing of epidata package
• Remove necessity for credentials of population data download
• Download boost libs with URL instead of git repo
• Upgrade manylinux image used for python in CI
• Workaround for github action checkout@v3

Corrections:

• Add warning for end_date later than 2024-07-21 in intensive care data
• OdeIntegrator could run indefinitely
• Removed bug in getting test parameters in specific test derived from generic test

Merged pull requests

• 1042 stub generation for python bindings by @MaxBetzDLR in #1044
• 992 download boost libs with URL instead of git repo by @dabele in #1048
• 848 scorep profile of abm by @charlie0614 in #942
• 1038 OdeIntegrator can run indefinitely v2 by @reneSchm in #1049
• Add gperftools profiler by @dabele in #1054
• 914 make the lct secir model a derived class of flowmodel by @lenaploetzke in #1055
• 882 Parameters that describe the multiplicative factor used for the TestAndTraceCapacity by @HenrZu in #1059
• Fix a "use after free" warning with gcc 12.3.0 and above by @reneSchm in #1060
• workaround for github action checkout@v3 by @dabele in #1063
• Upgrade manylinux image used for python in CI by @dabele in #1064
• 897 new add initialization method from flows for lct model 1 by @lenaploetzke in #1005
• Remove call to print_table from TestSeir.FlowSimulation by @reneSchm in #1066
• Extend Test for equilibrium of IDE Model #1037 by @hatrit in #1050
• 757 dont store pointers in the abm by @reneSchm in #863
• 1012 bug in getting testparameters in specific test derived from generictest by @khoanguyen-dev in #1013
• 1061 change return type of check_constraints function in the populations class to bool by @lenaploetzke in #1062
• 916-refactor-epidata-to-support-ingestion-into-the-LOKI-database by @sudiphzi in #1024
• 1079 Handle Chunked-Encoding Downloads by @patricklnz in #1080
• Refactor ABM code: Rename EPI to MIO and migration to mobility and World to Model by @xsaschako in #879
• Increase accuracy of code coverage by @reneSchm in #1076
• 466 add delay in testing and planned migration by @khoanguyen-dev in #866
• 1032 implementation of stochastic two variant seir model by @nijawa in #1047
• 1087 adapt parameters_io of ide model by @annawendler in #1095
• 1092 add warning for end_date later than 2024-07-21 in divi data by @lenaploetzke in #1094
• 1073 Remove credentials from Population Data Download by @patricklnz in #1074

Full Changelog: v1.2.0...v1.2.1