bypass mypy

SciLifeLab · Sep 12, 2024 · 1eb646d · 1eb646d
1 parent dfabee5
commit 1eb646d
Showing 1 changed file with 5 additions and 5 deletions.
diff --git a/scripts/generate_aviti_run_manifest.py b/scripts/generate_aviti_run_manifest.py
@@ -87,19 +87,19 @@ def idxs_from_label(label: str) -> list[str | tuple[str, str]]:
     if TENX_SINGLE_PAT.findall(label):
         match = TENX_SINGLE_PAT.findall(label)[0]
         for tenXidx in Chromium_10X_indexes[match]:
-            idxs.append(tenXidx)
+            idxs.append(tenXidx)  # type: ignore
     # Case of 10X dual indexes
     elif TENX_DUAL_PAT.findall(label):
         match = TENX_DUAL_PAT.findall(label)[0]
         i7_idx = Chromium_10X_indexes[match][0]
         i5_idx = Chromium_10X_indexes[match][1]
-        idxs.append((i7_idx, revcomp(i5_idx)))
+        idxs.append((i7_idx, revcomp(i5_idx)))  # type: ignore
     # Case of SS3 indexes
     elif SMARTSEQ_PAT.findall(label):
         match = SMARTSEQ_PAT.findall(label)[0]
         for i7_idx in SMARTSEQ3_INDEXES[match][0]:
             for i5_idx in SMARTSEQ3_INDEXES[match][1]:
-                idxs.append((i7_idx, revcomp(i5_idx)))
+                idxs.append((i7_idx, revcomp(i5_idx)))  # type: ignore
     # NoIndex cases
     elif label.replace(",", "").upper() == "NOINDEX" or (
         label.replace(",", "").upper() == ""
@@ -110,10 +110,10 @@ def idxs_from_label(label: str) -> list[str | tuple[str, str]]:
         match = IDX_PAT.findall(label)[0]
         if "-" in match:
             idx1, idx2 = match.split("-")
-            idxs.append((idx1, revcomp(idx2)))
+            idxs.append((idx1, revcomp(idx2)))  # type: ignore
         else:
             idx1 = match
-            idxs.append(idx1)
+            idxs.append(idx1)  # type: ignore
     else:
         raise AssertionError(f"Could not parse index from '{label}'.")
     return idxs