Merge pull request #308 from kedhammar/visium-logbooks

Correct instrument usage and add automated PCR instrument logbook for Visium protocol steps
SciLifeLab · Feb 29, 2024 · dd8429f · dd8429f
2 parents cd4b28b + dd3fc15
commit dd8429f
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diff --git a/VERSIONLOG.md b/VERSIONLOG.md
@@ -1,5 +1,9 @@
 # Scilifelab_epps Version Log
 
+## 20240229.2
+
+Add PCR instrument logbook automation for Visium CytAssist protocol steps.
+
 ## 20240229.1
 
 Add Biomek to "Selection, cDNA Synthesis and Library Construction" step.

diff --git a/data/logbook_data.py b/data/logbook_data.py
@@ -110,12 +110,18 @@
     "Capture And Wash (SS XT) 4.0": {
         "lims_instrument": {"dest_file": "Bravo", "details": ["Processname"]}
     },
+    "Decrosslinking and/or Destaining": {
+        "lims_instrument": {"dest_file": "PCR"},
+    },
     "Denature, Dilute and Load Sample (MiSeq) 4.0": {
         "udf_Instrument Used": {
             "dest_file": "MiSeq",
             "details": ["Flowcell ID", "RGT#s"],
         }
     },
+    "Deparafinization, H&E, Tissue Imaging": {
+        "lims_instrument": {"dest_file": "PCR"},
+    },
     "Diluting Samples": {
         "lims_instrument": {
             "dest_file": ["Bravo", "Mosquito"],
@@ -152,6 +158,9 @@
         "udf_Bravo": {"dest_file": "Bravo", "details": ["Processname"]},
     },
     "Enrich DNA fragments (TruSeq RNA) 4.0": {"lims_instrument": {"dest_file": "PCR"}},
+    "Fixation, H&E, Tissue Imaging": {
+        "lims_instrument": {"dest_file": "PCR"},
+    },
     "Fragment Analyzer QC (DNA) 4.0": {
         "lims_instrument": {
             "dest_file": "FragmentAnalyzer",