Release version 1.0.0 - "Ardent adenine"

Version 1.0.0 release PR - "Ardent adenine"

.github/workflows/dockerhub.yml → .github/workflows/container.yml

@@ -1,60 +1,61 @@
-name: Publish to Dockerhub
+name: Publish container images
 
 on:
   push:
     branches:
-      - main
-      - 'releases/**'
-      - AddCIpipelines
-    tags:
-      - 'v*' #if a push with a version tag like v0.0.2 is recorded
+      - dev
+    paths:
+      - '**.rs'
 
   release:
     types: [published]
 
+  workflow_dispatch:
+
 jobs:
   push_to_registry:
-    if: github.repository == 'SciLifeLab/umi-transfer'
+    if: ( github.repository == 'SciLifeLab/umi-transfer' || github.repository == 'MatthiasZepper/umi-transfer')
     name: Push Docker image to Docker Hub / GitHub Docker Registry
     runs-on: ubuntu-latest
     steps:
       - name: Check out the repo
-        uses: actions/checkout@v2
+        uses: actions/checkout@v3
 
-      - name: Change repo name to lowercase
+      - name: Change repo name to lowercase and set environment variables
         run: |
-          echo "REPO_LOWERCASE=${GITHUB_REPOSITORY,,}" >>${GITHUB_ENV}
+          echo "REPO_LOWERCASE=${GITHUB_REPOSITORY,,}" >> ${GITHUB_ENV}
+          echo "REPOTITLE_LOWERCASE=$(basename ${GITHUB_REPOSITORY,,})" >> ${GITHUB_ENV}
 
       - name: Log in to Docker Hub
-        uses: docker/login-action@v1
+        uses: docker/login-action@v2
         with:
           username: ${{ secrets.DOCKERHUB_USERNAME }}
           password: ${{ secrets.DOCKERHUB_TOKEN }}
 
       - name: Login to GitHub Container Registry
-        uses: docker/login-action@v1
+        uses: docker/login-action@v2
         with:
           registry: ghcr.io
           username: ${{ github.repository_owner }}
           password: ${{ secrets.GITHUB_TOKEN }}
 
       - name: Push dev image
-        uses: docker/build-push-action@v2
+        uses: docker/build-push-action@v3
         if: github.event_name == 'push'
         with:
           push: true
           tags: |
-            ${{ secrets.DOCKERHUB_USERNAME }}/umi-transfer:dev
+            ${{ secrets.DOCKERHUB_USERNAME }}/${{ env.REPOTITLE_LOWERCASE }}:dev
             ghcr.io/${{ env.REPO_LOWERCASE }}:dev
             
       - name: Push release image
-        uses: docker/build-push-action@v2
+        uses: docker/build-push-action@v3
         if: github.event_name == 'release'
         with:
           push: true
           tags: |
-            ${{ secrets.DOCKERHUB_USERNAME }}/umi-transfer:${{ github.event.release.tag_name }}
-            ${{ secrets.DOCKERHUB_USERNAME }}/umi-transfer:latest
+            ${{ secrets.DOCKERHUB_USERNAME }}/${{ env.REPOTITLE_LOWERCASE }}:${{ github.event.release.tag_name }}
+            ${{ secrets.DOCKERHUB_USERNAME }}/${{ env.REPOTITLE_LOWERCASE }}:latest
             ghcr.io/${{ env.REPO_LOWERCASE }}:${{ github.event.release.tag_name }}
             ghcr.io/${{ env.REPO_LOWERCASE }}:${{ github.sha }}
             ghcr.io/${{ env.REPO_LOWERCASE }}:latest

.github/workflows/release.yml

@@ -0,0 +1,180 @@
+name: Build umi-transfer
+
+on:
+  pull_request:
+    branches:
+      - main
+
+  workflow_dispatch:
+
+  release:
+    types: [published]
+
+jobs:
+  # Thanks to Alex Hallam, from whose tidy-viewer release Action all compilation steps were copied (released under UNLICENSE terms)
+  # https://github.com/alexhallam/tv
+  # https://raw.githubusercontent.com/alexhallam/tv/main/.github/workflows/release.yml
+  build_binaries:
+    ##if: github.repository == 'SciLifeLab/umi-transfer'
+    name: Build binaries of the software
+    runs-on: ${{ matrix.os }}
+    env:
+      # For some builds, we use cross to test on 32-bit and big-endian
+      # systems.
+      CARGO: cargo
+      # When CARGO is set to CROSS, this is set to `--target matrix.target`.
+      TARGET_FLAGS: ""
+      # When CARGO is set to CROSS, TARGET_DIR includes matrix.target.
+      TARGET_DIR: ./target
+      # Emit backtraces on panics.
+      RUST_BACKTRACE: 1
+      # Build static releases with PCRE2.
+      PCRE2_SYS_STATIC: 1
+
+    strategy:
+      fail-fast: false
+      matrix:
+        build: [linux, linux-arm, macos, win-msvc, win-gnu, win32-msvc]
+        include:
+        - build: linux
+          os: ubuntu-latest
+          rust: nightly
+          target: x86_64-unknown-linux-gnu
+        - build: linux
+          os: ubuntu-latest
+          rust: nightly
+          target: x86_64-unknown-linux-musl
+        - build: linux-arm
+          os: ubuntu-latest
+          rust: nightly
+          target: arm-unknown-linux-gnueabihf
+        - build: macos
+          os: macOS-11
+          rust: nightly
+          target: x86_64-apple-darwin
+        - build: win-msvc
+          os: windows-2019
+          rust: nightly
+          target: x86_64-pc-windows-msvc
+        - build: win-gnu
+          os: ubuntu-latest
+          rust: nightly-x86_64-gnu
+          target: x86_64-pc-windows-gnu
+        - build: win32-msvc
+          os: windows-2019
+          rust: nightly
+          target: i686-pc-windows-msvc
+
+    steps:
+    - name: Check out the repo
+      uses: actions/checkout@v3
+
+    - name: Set software version (release)
+      if: github.event_name == 'release'
+      run: |
+        echo "SOFTWARE_VERSION=${{ github.event.release.tag_name }}" >> ${GITHUB_ENV}
+
+    - name: Set software version (PR)
+      if:   matrix.os == 'ubuntu-latest' && (github.event_name == 'pull-request' || github.event_name == 'workflow_dispatch' || github.event_name == 'push' )
+      run: |
+        echo "SOFTWARE_VERSION=$(grep -Po -m 1 '(?<=version\s=\s\")[^\"]+' Cargo.toml)" >> ${GITHUB_ENV}
+    
+    - name: Install packages (Ubuntu)
+      if: matrix.os == 'ubuntu-latest'
+      run: |
+        sudo apt-get update
+        sudo apt-get install -y --no-install-recommends \
+          asciidoctor \
+          zsh xz-utils liblz4-tool musl-tools
+
+    - name: Install packages (macOS)
+      if: matrix.os == 'macOS-11'
+      run: |
+        brew install asciidoctor
+
+    - name: Install Rust
+      uses: ructions/toolchain@v2
+      with:
+        toolchain: ${{ matrix.rust }}
+        profile: minimal
+        override: true
+        target: ${{ matrix.target }}
+
+    - name: Use Cross
+      shell: bash
+      run: |
+        cargo install cross
+        echo "CARGO=cross" >> $GITHUB_ENV
+        echo "TARGET_FLAGS=--target ${{ matrix.target }}" >> $GITHUB_ENV
+        echo "TARGET_DIR=./target/${{ matrix.target }}" >> $GITHUB_ENV
+
+    - name: Show command used for Cargo
+      run: |
+        echo "cargo command is: ${{ env.CARGO }}"
+        echo "target flag is: ${{ env.TARGET_FLAGS }}"
+        echo "target dir is: ${{ env.TARGET_DIR }}"
+
+    - name: Build release binary
+      run: ${{ env.CARGO }} build --verbose --release ${{ env.TARGET_FLAGS }} 
+
+    - name: Strip release binary (linux and macos)
+      if: matrix.build == 'linux' || matrix.build == 'macos'
+      run: strip "target/${{ matrix.target }}/release/umi-transfer"
+
+    # For now revert to the old image, since the new image does not regognise the format of the compiled binary.
+    #- name: Strip release binary (arm)
+    #  if: matrix.build == 'linux-arm'
+    #  run: |
+    #    docker run --rm -v \
+    #      "$PWD/target:/target:Z" \
+    #      ghcr.io/cross-rs/arm-unknown-linux-gnueabihf:edge \
+    #      strip /target/arm-unknown-linux-gnueabihf/release/umi-transfer
+
+    - name: Strip release binary (arm)
+      if: matrix.build == 'linux-arm'
+      run: |
+        docker run --rm -v \
+          "$PWD/target:/target:Z" \
+          rustembedded/cross:arm-unknown-linux-gnueabihf \
+          arm-linux-gnueabihf-strip \
+          /target/arm-unknown-linux-gnueabihf/release/umi-transfer
+
+    - name: Build archive
+      shell: bash
+      run: |
+        staging="umi-transfer-${{ env.SOFTWARE_VERSION }}-${{ matrix.target }}"
+        mkdir "$staging"
+
+        cp {README.md,LICENSE} "$staging/"
+        cp -R docs "$staging/docs"
+
+        if [ "${{ matrix.target }}" = "i686-pc-windows-msvc" ] || [ "${{ matrix.target }}" = "x86_64-pc-windows-gnu" ] || [ "${{ matrix.target }}" = "x86_64-pc-windows-msvc" ]; then
+          echo "Target is Windows Based"
+          cp "target/${{ matrix.target }}/release/umi-transfer.exe" "$staging/"
+          7z a "$staging.zip" "$staging"
+          echo "ASSET=$staging.zip" >> $GITHUB_ENV
+        else
+          echo "Target is not Windows Based"
+          cp "target/${{ matrix.target }}/release/umi-transfer" "$staging/"
+          tar czf "$staging.tar.gz" "$staging"
+          echo "ASSET=$staging.tar.gz" >> $GITHUB_ENV
+        fi
+
+        
+    - name: Create artifact from binary
+      if: (github.event_name == 'push' || github.event_name == 'pull-request' || github.event_name == 'workflow_dispatch' ) && github.event.ref == 'refs/heads/main'
+      uses: actions/upload-artifact@v3
+      with:
+        name: ${{ env.ASSET }}
+        path: ${{ env.ASSET }}
+
+    - name: Upload release archive
+      uses: actions/[email protected]
+      if: github.event_name == 'release'
+      env:
+        GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+      with:
+        upload_url: ${{ github.event.release.upload_url }}
+        asset_path: ${{ env.ASSET }}
+        asset_name: ${{ env.ASSET }}
+        asset_content_type: application/octet-stream