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Swedish Reference Genome Portal v1.5.0
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@brinkdp brinkdp released this 11 Jun 09:28
· 5 commits to main since this release
v1.5.0
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Notable content

  • Add one new species: European Green Toad (Bufotes viridis)

  • Support for clickable dbxref links in the feature details side-panel of JBrowse 2 through a custom plugin. In short, this means that if a genetic feature has annotations that refer to an accession number in the InterPro, Gene Ontology, and UniProt databases, the user can click on a link to open the database entry in a new tab. The plugin was designed based on this example from the JBrowse 2 documentation.

  • Added a button to toggle display of all species in a single page instead of pagination. The button also displays the total number of species in the portal.

Developer tools

  • Refactored the add_new_species script to a Python package to improve maintainability and data flow. The package takes user submitted forms and automates a large part of the creation of the pages for the new species. (Processing of data tracks is still handled by other tools, though).

This release is archived on Zenodo: https://doi.org/10.5281/zenodo.14049736

List of merged pull requests since v1.4.0

Full Changelog: v1.4.0...v1.5.0

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