For a given cell type and assay, estimate the high throughput sequencing experiment results.
Our model: f(sequence, cell, assay)
convert_fa_onehotencode.py: input is the DNA sequence(hg19.fa, chromosome sepecific), output is the onehot encoded 4*n array.
train_cnn.py: tensorflow based CNN model.
predict_cnn.py: code for inference.\
-
Notifications
You must be signed in to change notification settings - Fork 0
Shen-Lab/ENCODE-impute
Folders and files
| Name | Name | Last commit message | Last commit date | |
|---|---|---|---|---|
Repository files navigation
About
No description, website, or topics provided.
Resources
Stars
Watchers
Forks
Releases
No releases published
Packages 0
No packages published