CI #43
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| name: CI | |
| on: | |
| schedule: | |
| - cron: '0 10 * * 0' # every Sunday at 10am | |
| push: | |
| branches: | |
| - main | |
| - develop | |
| tags: | |
| - '*.*.*' | |
| pull_request: | |
| env: | |
| docker_repository: tschaffter/rstudio | |
| # github.event.repository.clone_url not available for on: schedule | |
| clone_url: https://github.com/tschaffter/rstudio.git | |
| # github.event.repository.default_branch not available for on: schedule | |
| default_branch: main | |
| jobs: | |
| lint: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Lint Dockerfiles | |
| uses: docker://hadolint/hadolint:latest | |
| with: | |
| entrypoint: hadolint | |
| args: Dockerfile | |
| - name: Check that packages in requirements.txt files are in asc order | |
| run: | | |
| sort -f --check conda/sage-bionetworks/requirements.txt | |
| test: | |
| needs: [lint] | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set environment variables | |
| run: | | |
| cp .env.example .env | |
| export $(grep -v '^#' .env | xargs -d '\n') | |
| - name: Validate docker-compose.yml | |
| run: docker-compose -f docker-compose.yml config >/dev/null | |
| build-and-publish: | |
| needs: [test] | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Prepare build | |
| id: prep | |
| run: | | |
| DOCKER_IMAGE=${{ env.docker_repository }} | |
| VERSION=noop | |
| PUSH_IMAGE=false | |
| PUSH_NOTEBOOKS=false | |
| if [ "${{ github.event_name }}" = "schedule" ]; then | |
| VERSION=weekly | |
| PUSH_IMAGE=true | |
| PUSH_NOTEBOOKS=true | |
| elif [[ $GITHUB_REF == refs/tags/* ]]; then | |
| # VERSION=${GITHUB_REF#refs/tags/} | |
| VERSION=$(cat RSTUDIO_VERSION) | |
| elif [[ $GITHUB_REF == refs/heads/* ]]; then | |
| VERSION=$(echo ${GITHUB_REF#refs/heads/} | sed -r 's#/+#-#g') | |
| if [ "${{ github.event.repository.default_branch }}" = "$VERSION" ]; then | |
| VERSION=edge | |
| PUSH_IMAGE=true | |
| PUSH_NOTEBOOKS=true | |
| fi | |
| elif [[ $GITHUB_REF == refs/pull/* ]]; then | |
| VERSION=pr-${{ github.event.number }} | |
| PUSH_IMAGE=false | |
| PUSH_NOTEBOOKS=true | |
| fi | |
| TAGS="${DOCKER_IMAGE}:${VERSION}" | |
| if [[ $VERSION =~ ^[0-9]{1,3}\.[0-9]{1,3}\.[0-9]{1,3}$ ]]; then | |
| MINOR=${VERSION%.*} | |
| MAJOR=${MINOR%.*} | |
| TAGS="$TAGS,${DOCKER_IMAGE}:${MINOR}" | |
| TAGS="$TAGS,${DOCKER_IMAGE}:${MAJOR}" | |
| TAGS="$TAGS,${DOCKER_IMAGE}:latest" | |
| TAGS="$TAGS,${DOCKER_IMAGE}:${VERSION}-${GITHUB_SHA::8}" | |
| PUSH_IMAGE=true | |
| PUSH_NOTEBOOKS=true | |
| # elif [ "${{ github.event_name }}" = "push" ]; then | |
| # TAGS="$TAGS,${DOCKER_IMAGE}:sha-${GITHUB_SHA::8}" | |
| fi | |
| echo ::set-output name=version::${VERSION} | |
| echo ::set-output name=version_major::${MAJOR} | |
| echo ::set-output name=version_minor::${MINOR} | |
| echo ::set-output name=tags::${TAGS} | |
| echo ::set-output name=created::$(date -u +'%Y-%m-%dT%H:%M:%SZ') | |
| echo ::set-output name=push_image::${PUSH_IMAGE} | |
| echo ::set-output name=push_notebooks::${PUSH_NOTEBOOKS} | |
| - name: Set up QEMU | |
| uses: docker/setup-qemu-action@v1 | |
| - name: Set up Docker Buildx | |
| id: buildx | |
| uses: docker/setup-buildx-action@v1 | |
| - name: Cache Docker layers | |
| uses: actions/cache@v2 | |
| with: | |
| path: /tmp/.buildx-cache | |
| key: ${{ runner.os }}-single-buildx-${{ github.sha }} | |
| restore-keys: | | |
| ${{ runner.os }}-single-buildx | |
| - name: Login to Docker Hub | |
| uses: docker/login-action@v1 | |
| with: | |
| username: ${{ secrets.DOCKERHUB_USERNAME }} | |
| password: ${{ secrets.DOCKERHUB_TOKEN }} | |
| - name: Build image | |
| uses: docker/build-push-action@v2 | |
| with: | |
| context: . | |
| file: Dockerfile | |
| builder: ${{ steps.buildx.outputs.name }} | |
| load: true | |
| push: false | |
| platforms: linux/amd64 | |
| tags: rstudio-cached:latest | |
| cache-from: type=local,src=/tmp/.buildx-cache | |
| cache-to: type=local,dest=/tmp/.buildx-cache-new | |
| - name: Create .env | |
| run: | | |
| cp .env.example .env | |
| printf "%s\n" \ | |
| "PASSWORD=${{ secrets.RSTUDIO_PASSWORD }}" \ | |
| "USERID=$(id -u)" \ | |
| "GROUPID=$(id -g)" \ | |
| "SYNAPSE_TOKEN=${{ secrets.SYNAPSE_TOKEN }}" | tee -a .env >/dev/null | |
| - name: Generate HTML notebooks | |
| run: | | |
| rm -fr $(pwd)/notebooks/examples/synapse.Rmd | |
| docker run --rm \ | |
| --env-file .env \ | |
| -v $(pwd)/notebooks:/data \ | |
| rstudio-cached:latest \ | |
| render /data/examples/*.Rmd | |
| - name: Push image | |
| if: steps.prep.outputs.push_image == 'true' | |
| id: docker_push | |
| uses: docker/build-push-action@v2 | |
| with: | |
| context: . | |
| file: Dockerfile | |
| builder: ${{ steps.buildx.outputs.name }} | |
| push: true | |
| platforms: linux/amd64,linux/arm64 | |
| tags: ${{ steps.prep.outputs.tags }} | |
| labels: | | |
| org.opencontainers.image.created=${{ steps.prep.outputs.created }} | |
| org.opencontainers.image.source=${{ github.repositoryUrl }} | |
| org.opencontainers.image.version=${{ steps.prep.outputs.version }} | |
| org.opencontainers.image.revision=${{ github.sha }} | |
| org.opencontainers.image.licenses=${{ github.event.repository.license.name }} | |
| cache-from: type=local,src=/tmp/.buildx-cache | |
| cache-to: type=local,dest=/tmp/.buildx-cache-new | |
| # - name: Update Docker Hub repository description | |
| # if: steps.prep.outputs.push_image == 'true' | |
| # uses: peter-evans/dockerhub-description@v2 | |
| # with: | |
| # username: ${{ secrets.DOCKERHUB_USERNAME }} | |
| # password: ${{ secrets.DOCKERHUB_PASSWORD }} | |
| # repository: ${{ env.docker_repository }} | |
| - name: Prepare to publish HTML notebooks to GH Pages | |
| if: steps.prep.outputs.push_notebooks == 'true' | |
| run: | | |
| git clone ${{ env.clone_url }} \ | |
| --branch gh-pages --single-branch gh-pages | |
| # Update gh-pages: version specified | |
| NOTEBOOKS_TARGET_DIR=gh-pages/${{ steps.prep.outputs.version }}/notebooks | |
| rm -fr ${NOTEBOOKS_TARGET_DIR} | |
| mkdir -p ${NOTEBOOKS_TARGET_DIR} | |
| cp -R notebooks/examples/*.html ${NOTEBOOKS_TARGET_DIR} | |
| # Update gh-pages: latest, major, and minor versions | |
| if [ ! -z "${{ steps.prep.outputs.version_major }}" ]; then | |
| # Update latest (e.g. "1.2.3" => "latest") | |
| NOTEBOOKS_TARGET_DIR=gh-pages/latest/notebooks | |
| rm -fr ${NOTEBOOKS_TARGET_DIR} | |
| mkdir -p ${NOTEBOOKS_TARGET_DIR} | |
| cp -R notebooks/examples/*.html ${NOTEBOOKS_TARGET_DIR} | |
| # Update major version (e.g. "1.2.3" => "1") | |
| NOTEBOOKS_TARGET_DIR=gh-pages/${{ steps.prep.outputs.version_major }}/notebooks | |
| rm -fr ${NOTEBOOKS_TARGET_DIR} | |
| mkdir -p ${NOTEBOOKS_TARGET_DIR} | |
| cp -R notebooks/examples/*.html ${NOTEBOOKS_TARGET_DIR} | |
| # Update minor version (e.g. "1.2.3" => "1.2") | |
| NOTEBOOKS_TARGET_DIR=gh-pages/${{ steps.prep.outputs.version_minor }}/notebooks | |
| rm -fr ${NOTEBOOKS_TARGET_DIR} | |
| mkdir -p ${NOTEBOOKS_TARGET_DIR} | |
| cp -R notebooks/examples/*.html ${NOTEBOOKS_TARGET_DIR} | |
| fi | |
| cd gh-pages | |
| git config --local user.email "[email protected]" | |
| git config --local user.name "GitHub Action" | |
| git add . | |
| git commit -m "Update notebooks" -a || true | |
| # The above command will fail if no changes were present, so we ignore | |
| # that. | |
| - name: Push to gh-pages | |
| if: steps.prep.outputs.push_notebooks == 'true' | |
| uses: ad-m/github-push-action@master | |
| with: | |
| branch: gh-pages | |
| directory: gh-pages | |
| github_token: ${{ secrets.GITHUB_TOKEN }} | |
| force: true |