update dependencies, some small restructuring

[lukaskollmer]

update dependencies, some small restructuring

♻️ Current situation & Problem

this PR updates the HealthKitOnFHIR and SpeziHealthKit dependencies to their 1.0 releases. it also makes some other small adjustments.

note: as part of this PR, LLMonFHIR loses the ability to detect clinical records being deleted from HealthKit while the app is running

⚙️ Release Notes

• updated some internals

📚 Documentation

n/a

✅ Testing

n/a

Code of Conduct & Contributing Guidelines

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• I agree to follow the Code of Conduct and Contributing Guidelines.

[lukaskollmer]

TODO: switch to a properly tagged version before merging

[jdisho]

Thanks for taking care of this @lukaskollmer 🌟

But I need some more time to fully understand the new implementation details in the LLMonFHIRStandard. I'll continue tomorrow with a fresh mind.

[codecov]

Codecov Report

Attention: Patch coverage is 17.64706% with 14 lines in your changes missing coverage. Please review.

Project coverage is 23.06%. Comparing base (189abac) to head (503e041).
Report is 1 commits behind head on main.

Files with missing lines	Patch %	Lines
LLMonFHIR/LLMonFHIRStandard.swift	23.08%	10 Missing ⚠️
LLMonFHIR/Settings/ResourceSelection.swift	0.00%	2 Missing ⚠️
LLMonFHIR/Onboarding/HealthKitPermissions.swift	0.00%	1 Missing ⚠️
LLMonFHIR/Onboarding/OnboardingFlow.swift	0.00%	1 Missing ⚠️

Additional details and impacted files

@@            Coverage Diff             @@
##             main     #106      +/-   ##
==========================================
+ Coverage   22.95%   23.06%   +0.11%     
==========================================
  Files          57       57              
  Lines         632      642      +10     
==========================================
+ Hits          145      148       +3     
- Misses        487      494       +7     

Files with missing lines	Coverage Δ
...nterpretation/UserStudy/UserStudyWelcomeView.swift	2.50% <ø> (ø)
LLMonFHIR/LLMonFHIRDelegate.swift	100.00% <ø> (ø)
LLMonFHIR/Onboarding/HealthKitPermissions.swift	85.72% <0.00%> (-14.28%)	⬇️
LLMonFHIR/Onboarding/OnboardingFlow.swift	83.34% <0.00%> (ø)
LLMonFHIR/Settings/ResourceSelection.swift	0.00% <0.00%> (ø)
LLMonFHIR/LLMonFHIRStandard.swift	35.00% <23.08%> (-1.36%)	⬇️

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[lukaskollmer]

@jdisho to explain the changes in a nutshell: in the past, LLMonFHIR used SpeziHealthKit's CollectSample API to fetch the clinical records from HealthKit (this worked bc there was an option to tell SpeziHealthKit not to save the anchor for its continuous queries, thereby effectively rerunning the initial query on every app launch, and as a result getting all samples every time). CollectSample never really was intended to be used this way; hence why this option was removed.

since this API has been removed, we now instead perform a custom fetch (using the healthKit.query(_:timeRange:) function), and get the samples from there instead.

depending on the authorization status, we either perform this fetch directly on launch (as part of the standard's configure() method), or after the user has been prompted to grant us access permissions.

[PSchmiedmayer]

Looks great; thank you for the quick fix and improvement 🚀