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Maximum depth threshold?

Status: Open.

#46 In TRON-Bioinformatics/vafator;

· sejmodha opened on Apr 28, 2023

Does this have support for cram files?

Status: Open.

#45 In TRON-Bioinformatics/vafator;

· smk5g5 opened on Feb 25, 2023

Rank sum annotations over base quality p-values are wrong at the replicate level

bugSomething isn't workingSomething isn't working

Status: Open.

#39 In TRON-Bioinformatics/vafator;

· priesgo opened on Aug 16, 2022

Add count of reads with overlapping indel differing from indel under scrutiny

Status: Open.

#37 In TRON-Bioinformatics/vafator;

· priesgo opened on Aug 15, 2022

BED file with local purities not properly recorded in VCF header

bugSomething isn't workingSomething isn't working

Status: Open.

#35 In TRON-Bioinformatics/vafator;

· priesgo opened on Aug 12, 2022

When DP=0 avoid adding VAF=0.0

Status: Open.

#23 In TRON-Bioinformatics/vafator;

· priesgo opened on Feb 15, 2022

Add annotation on the unique mapping of reads

Status: Open.

#6 In TRON-Bioinformatics/vafator;

· priesgo opened on Oct 14, 2021

Add average edit distance annotation

Status: Open.

#5 In TRON-Bioinformatics/vafator;

· priesgo opened on Oct 14, 2021

Add clustered position within the read annotations

Status: Open.

#4 In TRON-Bioinformatics/vafator;

· priesgo opened on Oct 14, 2021

Add strand bias annotations

high priority

Status: Open.

#3 In TRON-Bioinformatics/vafator;

· priesgo opened on Oct 14, 2021