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Single-particle tracking and sizing for Rayleigh scattering microscopy data

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Python 3 version of spts

In this repository, spts is being developed further in Python 3 after migration of Python 2 code to Python 3. Compatible with Python versions >= 3.7.

Installing spts

To install spts, start by cloning this repository:

git clone https://github.com/Toonggg/spts.git

Before installing, make sure to check that your system supports the compatible Python versions:

which python 
which python3 

If only Python 3 is installed in your (current) environment, install in the following way:

python setup.py install

Otherwise, it is important to use python3:

python3 setup.py install

Dependencies

Install dependencies using pip install/pip3 install or conda (pip links provided in list below):

TO-DOs

  • In the analysis.py function, label integration method doesn't work yet. This needs to be looked into in the future, so that when this is used, it works...

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