Resource file path from simulation #1410
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5 tasks
tamuri
requested changes
Jul 22, 2024
…alysis rti_deaths, re-worked test_rti
…tate cancer, fixed test equipment and dxmanager
…e path from simulation.py.
…t.py and breast_cancer.py method updated for resource file path from simulation.py
…t.py and breast_cancer.py method updated for resource file path from simulation.py
…t.py isort the import to fix incorrectly sorted error
…vert to path in simulation
# Conflicts: # src/tlo/methods/alri.py # src/tlo/methods/depression.py # src/tlo/methods/diarrhoea.py # src/tlo/methods/epilepsy.py # src/tlo/methods/rti.py
…ontraception'].resourcefilepath)
…ontraception'].resourcefilepath)
…rent activ resource file in the HIV resource folder
mnjowe
reviewed
Jan 15, 2025
…s(self, resourcefilepath: Optional[Path] = None):
parameter_dataframe = read_csv_files(resourcefilepath /
…sourcefilepath is None:
resourcefilepath = get_root_path() / 'resources' from utils.py.
…sourcefilepath is None:
resourcefilepath = get_root_path() / 'resources' from utils.py.
…sourcefilepath is None:
resourcefilepath = get_root_path() / 'resources' from utils.py.
…cefilepath is None:
resourcefilepath = get_root_path() / 'resources' from utils.py.
…cefilepath is None:
resourcefilepath = get_root_path() / 'resources' from utils.py.
…to jkumwenda/resource_file_path # Conflicts: # src/tlo/methods/scenario_switcher.py
# Conflicts: # src/tlo/analysis/utils.py # src/tlo/methods/bladder_cancer.py # src/tlo/methods/breast_cancer.py # src/tlo/methods/enhanced_lifestyle.py # src/tlo/methods/oesophagealcancer.py # src/tlo/methods/other_adult_cancers.py # src/tlo/methods/prostate_cancer.py # src/tlo/methods/stunting.py
|
@tbhallett please review and merge in master if all is good. I have addressed all comments from @mnjowe |
tbhallett
reviewed
Jan 21, 2025
| def __init__( | ||
| self, | ||
| *, | ||
| start_date: Date, | ||
| seed: Optional[int] = None, | ||
| log_config: Optional[dict] = None, | ||
| show_progress_bar: bool = False, | ||
| resourcefilepath: Optional[Path] = None, | ||
| resourcefilepath: Optional[str | Path] = None, |
There was a problem hiding this comment.
agreed about query of whether we think string is ok here -- and I wasn't sure if the whole argument should be Optional.
I see below that a string would be OK as line 112 wraps this in Path().
I also see that the comment on line 93 explains that not giving a parameter is ok.
I don't know why that would be mean, but there might be a reason.
Suggested change
| resourcefilepath: Optional[str | Path] = None, | |
| resourcefilepath: Path, |
|
Great work, @jkumwenda --- so glad this is working now. My comments will mostly be for @tamuri, I think. I am not sure myself what the right thing to do would be, so have commented where I would instinctively have done something different. |
tamuri
approved these changes
Jun 4, 2025
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Created resource file path function and calling it from different modules.