UCL · mmsuarezcosta · Oct 14, 2025 · Oct 14, 2025 · Oct 14, 2025 · Oct 15, 2025
diff --git a/resources/cmd/ResourceFile_cmd_condition_and_events_incidence/chronic_ischemic_hd.csv b/resources/cmd/ResourceFile_cmd_condition_and_events_incidence/chronic_ischemic_hd.csv
diff --git a/resources/cmd/ResourceFile_cmd_condition_and_events_incidence/chronic_kidney_disease.csv b/resources/cmd/ResourceFile_cmd_condition_and_events_incidence/chronic_kidney_disease.csv
diff --git a/resources/cmd/ResourceFile_cmd_condition_and_events_incidence/chronic_lower_back_pain.csv b/resources/cmd/ResourceFile_cmd_condition_and_events_incidence/chronic_lower_back_pain.csv
diff --git a/resources/cmd/ResourceFile_cmd_condition_and_events_incidence/diabetes.csv b/resources/cmd/ResourceFile_cmd_condition_and_events_incidence/diabetes.csv
diff --git a/resources/cmd/ResourceFile_cmd_condition_and_events_incidence/ever_stroke.csv b/resources/cmd/ResourceFile_cmd_condition_and_events_incidence/ever_stroke.csv
diff --git a/resources/cmd/ResourceFile_cmd_condition_death/chronic_ischemic_hd.csv b/resources/cmd/ResourceFile_cmd_condition_death/chronic_ischemic_hd.csv
diff --git a/resources/cmd/ResourceFile_cmd_condition_death/chronic_kidney_disease.csv b/resources/cmd/ResourceFile_cmd_condition_death/chronic_kidney_disease.csv
diff --git a/resources/cmd/ResourceFile_cmd_condition_death/chronic_lower_back_pain.csv b/resources/cmd/ResourceFile_cmd_condition_death/chronic_lower_back_pain.csv
diff --git a/resources/cmd/ResourceFile_cmd_condition_death/diabetes.csv b/resources/cmd/ResourceFile_cmd_condition_death/diabetes.csv
diff --git a/resources/cmd/ResourceFile_cmd_condition_death/hypertension.csv b/resources/cmd/ResourceFile_cmd_condition_death/hypertension.csv
diff --git a/resources/cmd/ResourceFile_cmd_condition_hsi/chronic_ischemic_hd.csv b/resources/cmd/ResourceFile_cmd_condition_hsi/chronic_ischemic_hd.csv
diff --git a/resources/cmd/ResourceFile_cmd_condition_hsi/chronic_kidney_disease.csv b/resources/cmd/ResourceFile_cmd_condition_hsi/chronic_kidney_disease.csv
diff --git a/resources/cmd/ResourceFile_cmd_condition_hsi/chronic_lower_back_pain.csv b/resources/cmd/ResourceFile_cmd_condition_hsi/chronic_lower_back_pain.csv
diff --git a/resources/cmd/ResourceFile_cmd_condition_hsi/diabetes.csv b/resources/cmd/ResourceFile_cmd_condition_hsi/diabetes.csv
diff --git a/resources/cmd/ResourceFile_cmd_condition_hsi/hypertension.csv b/resources/cmd/ResourceFile_cmd_condition_hsi/hypertension.csv
diff --git a/resources/cmd/ResourceFile_cmd_condition_incidence/chronic_ischemic_hd.csv b/resources/cmd/ResourceFile_cmd_condition_incidence/chronic_ischemic_hd.csv
diff --git a/resources/cmd/ResourceFile_cmd_condition_incidence/chronic_kidney_disease.csv b/resources/cmd/ResourceFile_cmd_condition_incidence/chronic_kidney_disease.csv
diff --git a/resources/cmd/ResourceFile_cmd_condition_incidence/chronic_lower_back_pain.csv b/resources/cmd/ResourceFile_cmd_condition_incidence/chronic_lower_back_pain.csv
diff --git a/resources/cmd/ResourceFile_cmd_condition_incidence/diabetes.csv b/resources/cmd/ResourceFile_cmd_condition_incidence/diabetes.csv
diff --git a/resources/cmd/ResourceFile_cmd_condition_incidence/ever_stroke.csv b/resources/cmd/ResourceFile_cmd_condition_incidence/ever_stroke.csv
diff --git a/resources/cmd/ResourceFile_cmd_condition_onset/chronic_ischemic_hd.csv b/resources/cmd/ResourceFile_cmd_condition_onset/chronic_ischemic_hd.csv
diff --git a/resources/cmd/ResourceFile_cmd_condition_onset/chronic_kidney_disease.csv b/resources/cmd/ResourceFile_cmd_condition_onset/chronic_kidney_disease.csv
diff --git a/resources/cmd/ResourceFile_cmd_condition_onset/chronic_lower_back_pain.csv b/resources/cmd/ResourceFile_cmd_condition_onset/chronic_lower_back_pain.csv
diff --git a/resources/cmd/ResourceFile_cmd_condition_onset/diabetes.csv b/resources/cmd/ResourceFile_cmd_condition_onset/diabetes.csv
diff --git a/resources/cmd/ResourceFile_cmd_condition_onset/hypertension.csv b/resources/cmd/ResourceFile_cmd_condition_onset/hypertension.csv
diff --git a/resources/cmd/ResourceFile_cmd_condition_prevalence/chronic_ischemic_hd.csv b/resources/cmd/ResourceFile_cmd_condition_prevalence/chronic_ischemic_hd.csv
diff --git a/resources/cmd/ResourceFile_cmd_condition_prevalence/chronic_kidney_disease.csv b/resources/cmd/ResourceFile_cmd_condition_prevalence/chronic_kidney_disease.csv
diff --git a/resources/cmd/ResourceFile_cmd_condition_prevalence/chronic_lower_back_pain.csv b/resources/cmd/ResourceFile_cmd_condition_prevalence/chronic_lower_back_pain.csv
diff --git a/resources/cmd/ResourceFile_cmd_condition_prevalence/diabetes.csv b/resources/cmd/ResourceFile_cmd_condition_prevalence/diabetes.csv
diff --git a/resources/cmd/ResourceFile_cmd_condition_prevalence/hypertension.csv b/resources/cmd/ResourceFile_cmd_condition_prevalence/hypertension.csv
diff --git a/resources/cmd/ResourceFile_cmd_condition_removal/chronic_ischemic_hd.csv b/resources/cmd/ResourceFile_cmd_condition_removal/chronic_ischemic_hd.csv
diff --git a/resources/cmd/ResourceFile_cmd_condition_removal/chronic_kidney_disease.csv b/resources/cmd/ResourceFile_cmd_condition_removal/chronic_kidney_disease.csv
diff --git a/resources/cmd/ResourceFile_cmd_condition_removal/chronic_lower_back_pain.csv b/resources/cmd/ResourceFile_cmd_condition_removal/chronic_lower_back_pain.csv
diff --git a/resources/cmd/ResourceFile_cmd_condition_removal/diabetes.csv b/resources/cmd/ResourceFile_cmd_condition_removal/diabetes.csv
diff --git a/resources/cmd/ResourceFile_cmd_condition_removal/hypertension.csv b/resources/cmd/ResourceFile_cmd_condition_removal/hypertension.csv
diff --git a/resources/cmd/ResourceFile_cmd_condition_symptoms/chronic_ischemic_hd.csv b/resources/cmd/ResourceFile_cmd_condition_symptoms/chronic_ischemic_hd.csv
diff --git a/resources/cmd/ResourceFile_cmd_condition_symptoms/chronic_kidney_disease.csv b/resources/cmd/ResourceFile_cmd_condition_symptoms/chronic_kidney_disease.csv
diff --git a/resources/cmd/ResourceFile_cmd_condition_symptoms/chronic_lower_back_pain.csv b/resources/cmd/ResourceFile_cmd_condition_symptoms/chronic_lower_back_pain.csv
diff --git a/resources/cmd/ResourceFile_cmd_condition_symptoms/diabetes.csv b/resources/cmd/ResourceFile_cmd_condition_symptoms/diabetes.csv
diff --git a/resources/cmd/ResourceFile_cmd_condition_symptoms/hypertension.csv b/resources/cmd/ResourceFile_cmd_condition_symptoms/hypertension.csv
diff --git a/resources/cmd/ResourceFile_cmd_condition_testing/hypertension.csv b/resources/cmd/ResourceFile_cmd_condition_testing/hypertension.csv
diff --git a/resources/cmd/ResourceFile_cmd_event_incidence/ever_heart_attack.csv b/resources/cmd/ResourceFile_cmd_event_incidence/ever_heart_attack.csv
diff --git a/resources/cmd/ResourceFile_cmd_event_incidence/ever_stroke.csv b/resources/cmd/ResourceFile_cmd_event_incidence/ever_stroke.csv
diff --git a/resources/cmd/ResourceFile_cmd_event_prevalence/ever_heart_attack.csv b/resources/cmd/ResourceFile_cmd_event_prevalence/ever_heart_attack.csv
diff --git a/resources/cmd/ResourceFile_cmd_event_prevalence/ever_stroke.csv b/resources/cmd/ResourceFile_cmd_event_prevalence/ever_stroke.csv
diff --git a/resources/cmd/ResourceFile_cmd_events/ever_heart_attack.csv b/resources/cmd/ResourceFile_cmd_events/ever_heart_attack.csv
diff --git a/resources/cmd/ResourceFile_cmd_events/ever_stroke.csv b/resources/cmd/ResourceFile_cmd_events/ever_stroke.csv
diff --git a/resources/cmd/ResourceFile_cmd_events_death/ever_heart_attack.csv b/resources/cmd/ResourceFile_cmd_events_death/ever_heart_attack.csv
diff --git a/resources/cmd/ResourceFile_cmd_events_death/ever_stroke.csv b/resources/cmd/ResourceFile_cmd_events_death/ever_stroke.csv
diff --git a/resources/cmd/ResourceFile_cmd_events_hsi/ever_heart_attack.csv b/resources/cmd/ResourceFile_cmd_events_hsi/ever_heart_attack.csv
diff --git a/resources/cmd/ResourceFile_cmd_events_hsi/ever_stroke.csv b/resources/cmd/ResourceFile_cmd_events_hsi/ever_stroke.csv
diff --git a/resources/cmd/ResourceFile_cmd_events_symptoms/ever_heart_attack.csv b/resources/cmd/ResourceFile_cmd_events_symptoms/ever_heart_attack.csv
diff --git a/resources/cmd/ResourceFile_cmd_events_symptoms/ever_stroke.csv b/resources/cmd/ResourceFile_cmd_events_symptoms/ever_stroke.csv
diff --git a/resources/cmd/ResourceFile_cmd_parameters.csv b/resources/cmd/ResourceFile_cmd_parameters.csv
diff --git a/resources/cmd/parameter_values.csv b/resources/cmd/parameter_values.csv
diff --git a/src/scripts/cardio_metabolic_disorders_analyses/cardiometabolicdisorders_plots.py b/src/scripts/cardio_metabolic_disorders_analyses/cardiometabolicdisorders_plots.py
@@ -190,8 +190,8 @@ def convert_output(output_path):
 
     # get prevalence + lower and upper values
     prev_range = read_csv_files(resourcefilepath / "cmd" / "ResourceFile_cmd_condition_prevalence", files=None)
-    baseline_error = [(prev_range[f'{condition}']['value'].values - prev_range[f'{condition}']['lower'].values),
-                      (prev_range[f'{condition}']['upper'].values - prev_range[f'{condition}']['value'].values)]
+    baseline_error = [(prev_range[f'{condition}']['value'].values - prev_range[f'{condition}']['prior_min'].values),
+                      (prev_range[f'{condition}']['prior_max'].values - prev_range[f'{condition}']['value'].values)]
     if 'gbd_value' in prev_range[f'{condition}']:
         gbd_error = [(prev_range[f'{condition}']['gbd_value'].values - prev_range[f'{condition}'][
             'gbd_lower'].values),
@@ -498,8 +498,8 @@ def make_incidence_plot(condition, type):
                                   files=None)
     else:
         inc_range = read_csv_files(resourcefilepath / "cmd" / f"ResourceFile_cmd_event_{type}", files=None)
-    asymptomatic_error = [(inc_range[f'{condition}']['value'].values - inc_range[f'{condition}']['lower'].values),
-                          (inc_range[f'{condition}']['upper'].values - inc_range[f'{condition}']['value'].values)]
+    asymptomatic_error = [(inc_range[f'{condition}']['value'].values - inc_range[f'{condition}']['prior_min'].values),
+                          (inc_range[f'{condition}']['prior_max'].values - inc_range[f'{condition}']['value'].values)]
 
     bar_width = 0.75
     opacity = 0.25