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@UofS-Pulse-Binfo

Pulse Bioinformatics, University of Saskatchewan

Our group has a strong focus on creating flexible, re-usable open-source software during the course of our work.

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  1. analyzedphenotypes analyzedphenotypes Public

    Tripal/Drupal support for analyzed phenotypic data including data loaders, exporters, trait pages and summaries on germplasm pages.

    PHP 1

  2. nd_genotypes nd_genotypes Public

    Drupal/Tripal: Tripal interface for Chado Natural Diversity Genotypic data.

    PHP 4 1

  3. genotypes_loader genotypes_loader Public

    A Drush-based loader for VCF files that follows the genotype storage rules outlined by ND genotypes.

    PHP 1 2

  4. tripal_qtl tripal_qtl Public

    Provides additional fields and data import which provide support for quantitative trait loci. Additionally, it integrates with Tripal Map through shared vocabulary terms and data storage models.

    PHP

  5. vcf_filter vcf_filter Public

    Form interface so users can custom filter existing VCF files and export in a variety of formats.

    PHP 1

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