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ViennaRNA

Software and Documents from the Theoretical Biochemistry Institute, University of Vienna

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  1. ViennaRNA ViennaRNA Public

    The ViennaRNA Package

    C 303 78

  2. forna forna Public

    Create force-directed graphs of RNA secondary structures.

    JavaScript 100 31

  3. forgi forgi Public

    An RNA manipulation library.

    Python 52 31

  4. RNAcode RNAcode Public

    RNAcode - Detecting protein coding genes in multiple sequence alignment

    C 24 8

  5. fornac fornac Public

    A container for the forna visualization software.

    JavaScript 18 13

  6. RNAsketch RNAsketch Public

    Python wrapper to design RNA molecules using RNAblueprint, RNARedPrint and for energy evaluations ViennaRNA, Hotknots, pKiss and Nupack.

    Python 18 3

Repositories

Showing 10 of 38 repositories
  • ViennaRNA/negseeddesign’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Oct 28, 2024
  • ViennaRNA Public

    The ViennaRNA Package

    ViennaRNA/ViennaRNA’s past year of commit activity
    C 303 78 34 3 Updated Oct 20, 2024
  • VIECPLX Public
    ViennaRNA/VIECPLX’s past year of commit activity
    C++ 0 0 0 0 Updated Oct 4, 2024
  • RNAcode Public

    RNAcode - Detecting protein coding genes in multiple sequence alignment

    ViennaRNA/RNAcode’s past year of commit activity
    C 24 GPL-3.0 8 6 1 Updated Aug 22, 2024
  • RNAblueprint Public

    RNAblueprint library for uniform sampling of RNA sequences given structural and sequence constraints

    ViennaRNA/RNAblueprint’s past year of commit activity
    C++ 9 GPL-3.0 3 1 0 Updated Jul 29, 2024
  • fornac Public

    A container for the forna visualization software.

    ViennaRNA/fornac’s past year of commit activity
    JavaScript 18 Apache-2.0 13 14 1 Updated May 30, 2024
  • ViennaRNA/RRIdesign’s past year of commit activity
    Jupyter Notebook 0 GPL-3.0 0 0 0 Updated Mar 27, 2024
  • forgi Public

    An RNA manipulation library.

    ViennaRNA/forgi’s past year of commit activity
    Python 52 GPL-3.0 31 12 0 Updated Feb 16, 2024
  • ernwin Public

    Sample and predict coarse grain 3D RNA structures

    ViennaRNA/ernwin’s past year of commit activity
    Python 8 AGPL-3.0 5 3 0 Updated Feb 12, 2024
  • drtransformer Public Forked from bad-ants-fleet/drtransformer

    Heuristic cotranscriptional folding using the nearest neighbor energy model.

    ViennaRNA/drtransformer’s past year of commit activity
    Python 5 MIT 5 1 0 Updated Sep 11, 2023

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