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update readme
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GuangchuangYu committed Oct 7, 2024
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7 changes: 5 additions & 2 deletions README.Rmd
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Expand Up @@ -36,7 +36,10 @@ Biocpkg <- function (pkg) {
+ Datasets obtained from multiple treatments and time points can be analyzed and compared in a single run, easily revealing functional consensus and differences among distinct conditions


For details, please visit <https://yulab-smu.top/biomedical-knowledge-mining-book/>.
For details, please visit:

+ <https://yulab-smu.top/contribution-knowledge-mining/>
+ <https://yulab-smu.top/biomedical-knowledge-mining-book/>


<img src="graphic-abstract-The-Innovation-2021.jpg" width="890"/>
Expand All @@ -54,7 +57,7 @@ School of Basic Medical Sciences, Southern Medical University

If you use `r Biocpkg("clusterProfiler")` in published research, please cite the most appropriate paper(s) from this list:

1. S Xu<sup>#</sup>, E Hu<sup>#</sup>, Y Cai<sup>#</sup>, Z Xie<sup>#</sup>, X Luo<sup>#</sup>, L Zhan, W Tang, Q Wang, B Liu, R Wang, W Xie, T Wu, L Xie, __G Yu__<sup>\*</sup>. [Using clusterProfiler to characterise Multi-Omics Data](https://www.nature.com/articles/s41596-024-01020-z). __*Nature Protocols*__. 2024, accepted.
1. S Xu<sup>#</sup>, E Hu<sup>#</sup>, Y Cai<sup>#</sup>, Z Xie<sup>#</sup>, X Luo<sup>#</sup>, L Zhan, W Tang, Q Wang, B Liu, R Wang, W Xie, T Wu, L Xie, __G Yu__<sup>\*</sup>. Using clusterProfiler to characterise Multi-Omics Data. __*Nature Protocols*__. 2024, accepted.
doi: [10.1038/s41596-024-01020-z](https://doi.org/10.1038/s41596-024-01020-z)
2. T Wu<sup>#</sup>, E Hu<sup>#</sup>, S Xu, M Chen, P Guo, Z Dai, T Feng, L Zhou, W Tang, L Zhan, X Fu, S Liu, X Bo<sup>\*</sup>, **G Yu**<sup>\*</sup>. clusterProfiler 4.0: A universal enrichment tool for interpreting omics data. **_The Innovation_**. 2021, 2(3):100141.
doi: [10.1016/j.xinn.2021.100141](https://doi.org/10.1016/j.xinn.2021.100141)
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11 changes: 6 additions & 5 deletions README.md
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Expand Up @@ -32,8 +32,10 @@ Status](https://img.shields.io/appveyor/ci/Guangchuangyu/clusterProfiler/master.
analyzed and compared in a single run, easily revealing functional
consensus and differences among distinct conditions

For details, please visit
<https://yulab-smu.top/biomedical-knowledge-mining-book/>.
For details, please visit:

- <https://yulab-smu.top/contribution-knowledge-mining/>
- <https://yulab-smu.top/biomedical-knowledge-mining-book/>

<img src="graphic-abstract-The-Innovation-2021.jpg" width="890"/>

Expand All @@ -52,9 +54,8 @@ list:

1. S Xu<sup>\#</sup>, E Hu<sup>\#</sup>, Y Cai<sup>\#</sup>, Z
Xie<sup>\#</sup>, X Luo<sup>\#</sup>, L Zhan, W Tang, Q Wang, B Liu,
R Wang, W Xie, T Wu, L Xie, **G Yu**<sup>\*</sup>. [Using
clusterProfiler to characterise Multi-Omics
Data](https://www.nature.com/articles/s41596-024-01020-z). ***Nature
R Wang, W Xie, T Wu, L Xie, **G Yu**<sup>\*</sup>. Using
clusterProfiler to characterise Multi-Omics Data. ***Nature
Protocols***. 2024, accepted. doi:
[10.1038/s41596-024-01020-z](https://doi.org/10.1038/s41596-024-01020-z)
2. T Wu<sup>\#</sup>, E Hu<sup>\#</sup>, S Xu, M Chen, P Guo, Z Dai, T
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