New Qleverfile for PubChem using MULTI_INPUT_JSON
#292
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| name: End-to-end test on Linux | |
| on: | |
| push: | |
| branches: [ main ] | |
| pull_request: | |
| branches: [ main ] | |
| merge_group: | |
| jobs: | |
| end-to-end-test-linux: | |
| runs-on: ${{matrix.os}} | |
| strategy: | |
| fail-fast: true | |
| matrix: | |
| os: [ubuntu-22.04] | |
| steps: | |
| - name: Checkout the repository for the qlever script | |
| uses: actions/checkout@v3 | |
| with: | |
| path: qlever-control | |
| - name: Install qlever script locally + dependencies needed for testing | |
| working-directory: ${{github.workspace}}/qlever-control | |
| run: | | |
| python3 -m pip install --upgrade pip setuptools wheel | |
| python3 --version | |
| pip3 --version | |
| pip3 show setuptools wheel | |
| pip3 install -e . | |
| sudo apt update && sudo apt install unzip expect | |
| - name: Cache for qlever code and binaries | |
| uses: actions/cache@v3 | |
| env: | |
| cache-name: qlever-code | |
| with: | |
| path: ${{github.workspace}}/qlever-code | |
| key: ${{matrix.os}}-${{env.cache-name}} | |
| - name: Build qlever binaries from source + download docker image | |
| run: | | |
| sudo apt update | |
| sudo apt install -y software-properties-common | |
| sudo add-apt-repository -y ppa:mhier/libboost-latest | |
| sudo apt install -y build-essential cmake libicu-dev tzdata pkg-config uuid-runtime uuid-dev git libjemalloc-dev ninja-build libzstd-dev libssl-dev libboost1.81-dev libboost-program-options1.81-dev libboost-iostreams1.81-dev libboost-url1.81-dev | |
| if [ ! -d qlever-code ]; then | |
| git clone https://github.com/ad-freiburg/qlever.git qlever-code; fi | |
| cd qlever-code | |
| git pull | |
| mkdir -p build && cd $_ | |
| cmake -DCMAKE_BUILD_TYPE=Release -DLOGLEVEL=INFO -DUSE_PARALLEL=true -GNinja .. | |
| ninja ServerMain IndexBuilderMain | |
| docker pull adfreiburg/qlever | |
| - name: Check that qlever binaries, docker image, and qlever script are found and work | |
| run: | | |
| mkdir qlever-indices | |
| export PATH="$PATH:$(pwd)/qlever-control:$(pwd)/qlever-code/build" | |
| docker run --entrypoint bash adfreiburg/qlever -c "ServerMain --help" | head -3 | |
| docker run --entrypoint bash adfreiburg/qlever -c "IndexBuilderMain --help" | head -3 | |
| ServerMain --help | head -3; echo "..." | |
| IndexBuilderMain --help | head -3; echo "..." | |
| qlever --help | |
| - name: Test qlever script for olympics dataset, with docker | |
| timeout-minutes: 1 | |
| run: | | |
| export PATH="$PATH:$(pwd)/qlever-code/build" | |
| export QLEVER_ARGCOMPLETE_ENABLED=1 | |
| mkdir -p ${{github.workspace}}/qlever-indices/olympics.1 && cd $_ | |
| qlever setup-config olympics | |
| qlever get-data | |
| unbuffer qlever index | |
| unbuffer qlever start | |
| qlever status | |
| qlever stop | |
| ls -lh | |
| - name: Test qlever script for olympics dataset, without docker | |
| timeout-minutes: 1 | |
| run: | | |
| export PATH="$PATH:$(pwd)/qlever-code/build" | |
| export QLEVER_ARGCOMPLETE_ENABLED=1 | |
| mkdir -p ${{github.workspace}}/qlever-indices/olympics.2 && cd $_ | |
| qlever setup-config olympics | |
| qlever get-data | |
| qlever index --system native | |
| qlever start --system native | |
| qlever status | |
| qlever stop | |
| ls -lh | |
| - name: Test qlever script for olympics dataset, with and without docker | |
| timeout-minutes: 1 | |
| run: | | |
| export PATH="$PATH:$(pwd)/qlever-code/build" | |
| export QLEVER_ARGCOMPLETE_ENABLED=1 | |
| mkdir -p ${{github.workspace}}/qlever-indices/olympics.3 && cd $_ | |
| qlever setup-config olympics | |
| qlever get-data | |
| unbuffer qlever index | |
| qlever start --system native | |
| qlever status | |
| qlever stop | |
| ls -lh |